patsnap-biologics-sequence

name	patsnap-biologics-sequence
description	Patsnap Biologics & Sequence MCP for AI agents. Intelligent platform for biological sequences and macromolecules, covering antibody-antigen interaction discovery, full-lifecycle sequence search, sequence fetching and alignment, and modification status analysis.
homepage	https://open.patsnap.com/marketplace/mcp-servers/biologics-sequence
metadata	{"author":"Patsnap","category":"Life Science","version":"1.0.0","requires":{"mcp_endpoint":"https://connect.patsnap.com/ab57ab/logic-mcp?apikey=YOUR_API_KEY"}}

Setup

Get your API Key at https://open.patsnap.com

Patsnap Biologics & Sequence

This skill connects your AI agent to Patsnap's Biologics & Sequence MCP server — providing professional-grade life sciences intelligence.

Intelligent platform for biological sequences and macromolecules, covering antibody-antigen interaction discovery, full-lifecycle sequence search, sequence fetching and alignment, and modification status analysis.

Prerequisites

This skill requires the Patsnap Biologics & Sequence MCP server to be configured in your environment:

{
  "mcpServers": {
    "biologics_sequence": {
      "url": "https://connect.patsnap.com/ab57ab/logic-mcp?apikey=YOUR_API_KEY",
      "type": "streamableHttp"
    }
  }
}

Get your API key at open.patsnap.com. For the full list of available tools and input parameters, refer to the official MCP server documentation: https://open.patsnap.com/marketplace/mcp-servers/biologics-sequence

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Instructions for AI Agents

Step 1: Sequence Identification

When a user provides a protein or nucleotide sequence or a gene name, normalize the entity to a standard ID or sequence before searching.

Step 2: Submit Asynchronous Searches

For sequence_search_submit and modification_search_submit, capture the returned job_id and poll sequence_search_check_status until status is success before fetching results.

Step 3: Fetch and Analyze

Use sequence_search_get_results, sequence_fetch, or sequence_alignment to retrieve and compare records. For antibody discovery, use antibody_antigen_search directly.

Step 4: Output Synthesis

Present sequence data with alignments, functional annotations, and IP landscape summaries.

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Example Workflows

Antibody FTO Check

1. Submit sequence_search_submit with the antibody sequence.
2. Poll sequence_search_check_status until success.
3. Fetch results and assess high-identity patents.

Antibody Discovery

1. Use antibody_antigen_search for antibodies against a target antigen.
2. Fetch sequences with sequence_fetch.
3. Align candidates with sequence_alignment.

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Resources

• Patsnap Life Sciences: eureka.patsnap.com/ls-landing
• MCP Server: open.patsnap.com/marketplace/mcp-servers
• API Docs: open.patsnap.com/devportal