agent_skills

Style guidelines for writing manuscript text.

Job dispatch infrastructure. Use when packaging a python script for batch / parallel execution, locally or on SLURM.

Guide for controlling Adobe Illustrator via MCP tools and osascript.

Extract scientific journal article PDFs to lossless Markdown using MinerU. Assumes a pre-existing conda env named "mineru".

Agent roles, models, and the dispatch pattern for delegating to subagents.

Executive role for an agent that dispatches subagents.

Iterative polish of multi-panel publication figures. Patterns for long-lived layout-revision sessions where a human critiques each render.

Opinions for standalone Python scripts. Analysis runs, HPC jobs, batch processing.

Coding philosophy, conventions, and expectations for Python code.

How to maintain and update MEMORIES.md files for knowledge persistence

Workspace layout, artifact storage, and behavior rules shared by every agent (managers and subagents alike).

Refactor an exploratory Jupyter notebook into a single runnable Python script while preserving the scientific "meat". Use when converting an .ipynb to a standalone script for batch/HPC execution.

Guide for styling scientific figures with matplotlib.

Patterns for efficiently working in LaTeX manuscript repositories — ingesting structure, viewing figures, reading reviewer comments, and making edits.

Tool for preparing PDF figure files for embedding in LaTeX (e.g., with \includegraphics).