Use this Skill for bibliometric analysis: author h-index, citation counts, co-authorship networks, co-citation analysis, bibliographic coupling, and VOSviewer-compatible output.
Instrucciones de origen · Vista previa de solo lectura
name
scientometrics
description
Use this Skill for bibliometric analysis: author h-index, citation counts, co-authorship networks, co-citation analysis, bibliographic coupling, and VOSviewer-compatible output.
TL;DR — Bibliometric analysis via the OpenAlex API. Compute author h-index and
citation counts, build co-authorship networks with NetworkX, run co-citation and
bibliographic coupling analyses, identify research fronts, and export
VOSviewer-compatible edge/node files.
1. Overview
What Problem Does This Skill Solve?
Scientometrics provides quantitative methods for understanding how science evolves,
who the key players are, and which research fronts are emerging. Manual analysis is
tedious and error-prone. This Skill automates the full pipeline:
Author-level metrics — h-index, total citations, career publication count
Journal impact — field-normalized citation counts from the OpenAlex works endpoint
Co-authorship networks — graph construction, centrality, community detection
Co-citation analysis — which papers are frequently cited together
Bibliographic coupling — which papers share many references
Research front identification — fast-growing citation clusters
VOSviewer export — ready-to-open .txt files for interactive visualization
Applicable Scenarios
Scenario
Entry Point
Evaluate a researcher before collaboration
get_author_metrics(orcid)
Map the intellectual structure of a field
build_coauthorship_network(topic, years)
Find seminal papers for a literature review
identify_research_fronts(topic)
Visualize a network in VOSviewer
export_vosviewer_network(G)
Benchmark journal standing
get_journal_impact(issn)
Key Limitations
OpenAlex author disambiguation is imperfect; prefer ORCID-based lookups when available.
Citation counts lag by ~2 weeks from the live OpenAlex index.
Co-authorship graphs for very large topics (>50 000 papers) require pagination and
may take several minutes to build.
VOSviewer export uses the simple pair-wise weight format; large networks (>5 000 nodes)
may be slow to open in VOSviewer.
2. Environment Setup
# Create and activate a dedicated environment
conda create -n scientometrics python=3.11 -y
conda activate scientometrics
# Install all dependencies
pip install requests pandas networkx matplotlib numpy scipy
# Optional: set a polite-pool email for OpenAlex (improves response speed)export OPENALEX_EMAIL="researcher@university.edu"
import os
import time
import requests
import pandas as pd
import numpy as np
import networkx as nx
import matplotlib.pyplot as plt
import matplotlib.cm as cm
from typing importOptional, List, Dict, Tuplefrom collections import defaultdict
OPENALEX_BASE = "https://api.openalex.org"
DEFAULT_EMAIL = os.getenv("OPENALEX_EMAIL", "researcher@example.com")
def_oa_get(endpoint: str, params: dict, retries: int = 3) -> dict:
"""
Thin wrapper around OpenAlex GET with retry logic.
Args:
endpoint: API endpoint path, e.g. '/works' or '/authors/A1234'.
params: Query parameters dict.
retries: Number of retry attempts on transient errors.
Returns:
Parsed JSON response dict.
"""
url = OPENALEX_BASE + endpoint
params.setdefault("mailto", DEFAULT_EMAIL)
for attempt inrange(retries):
try:
resp = requests.get(url, params=params, timeout=30)
resp.raise_for_status()
return resp.json()
except requests.HTTPError as exc:
if exc.response.status_code == 429:
time.sleep(2 ** attempt)
else:
raiseraise RuntimeError(f"Failed after {retries} retries: {url}")
defreconstruct_abstract(inverted_index: Optional[dict]) -> str:
"""Reconstruct plain-text abstract from OpenAlex inverted index."""ifnot inverted_index:
return""
max_pos = max(pos for positions in inverted_index.values() for pos in positions)
words = [""] * (max_pos + 1)
for word, positions in inverted_index.items():
for pos in positions:
words[pos] = word
return" ".join(words)
3.2 Author Metrics
defget_author_metrics(
orcid: Optional[str] = None,
openalex_author_id: Optional[str] = None,
) -> dict:
"""
Fetch comprehensive metrics for a researcher from OpenAlex.
Provide either an ORCID (preferred) or an OpenAlex author ID (e.g. 'A1234567890').
Args:
orcid: ORCID identifier, e.g. '0000-0002-1234-5678'.
openalex_author_id: OpenAlex author ID string, e.g. 'A1234567890'.
Returns:
Dict with keys: name, orcid, openalex_id, works_count, cited_by_count,
h_index, i10_index, top_venues, years_active, works_df.
"""if orcid:
data = _oa_get(f"/authors/orcid:{orcid}", {})
elif openalex_author_id:
data = _oa_get(f"/authors/{openalex_author_id}", {})
else:
raise ValueError("Provide either orcid or openalex_author_id.")
author_id = data["id"].split("/")[-1]
# Fetch all works by this author
works = _fetch_all_works(
filter_str=f"author.id:{author_id}",
select="doi,title,publication_year,cited_by_count,primary_location",
max_results=5000,
)
# Compute derived metrics
h_index = compute_h_index(works)
citation_counts = [w.get("cited_by_count", 0) for w in works]
i10_index = sum(1for c in citation_counts if c >= 10)
venues = [
(w.get("primary_location") or {}).get("source", {}) or {}
for w in works
]
venue_names = [v.get("display_name", "") for v in venues if v.get("display_name")]
from collections import Counter
top_venues = Counter(venue_names).most_common(5)
years = [w.get("publication_year") for w in works if w.get("publication_year")]
years_active = (min(years), max(years)) if years else (None, None)
works_df = pd.DataFrame([{
"doi": (w.get("doi") or"").replace("https://doi.org/", ""),
"title": w.get("title", ""),
"year": w.get("publication_year"),
"citations": w.get("cited_by_count", 0),
"venue": ((w.get("primary_location") or {}).get("source") or {}).get("display_name", ""),
} for w in works])
return {
"name": data.get("display_name", ""),
"orcid": data.get("orcid", ""),
"openalex_id": author_id,
"works_count": data.get("works_count", len(works)),
"cited_by_count": data.get("cited_by_count", sum(citation_counts)),
"h_index": h_index,
"i10_index": i10_index,
"top_venues": top_venues,
"years_active": years_active,
"works_df": works_df,
}
defcompute_h_index(works: List[dict]) -> int:
"""
Compute the h-index from a list of OpenAlex work objects.
Args:
works: List of work dicts; each must have a 'cited_by_count' key.
Returns:
Integer h-index value.
"""
citations = sorted(
[w.get("cited_by_count", 0) for w in works], reverse=True
)
h = 0for i, c inenumerate(citations, start=1):
if c >= i:
h = i
else:
breakreturn h
def_fetch_all_works(
filter_str: str,
select: str,
max_results: int = 2000,
) -> List[dict]:
"""Paginate through /works endpoint and return all matching work dicts."""
per_page = 200
page = 1
collected = []
whilelen(collected) < max_results:
data = _oa_get("/works", {
"filter": filter_str,
"select": select,
"per-page": per_page,
"page": page,
})
results = data.get("results", [])
ifnot results:
break
collected.extend(results)
meta = data.get("meta", {})
total = meta.get("count", 0)
if page * per_page >= min(total, max_results):
break
page += 1
time.sleep(0.1)
return collected[:max_results]
3.3 Co-Authorship Network
defbuild_coauthorship_network(
topic: str,
years: Tuple[int, int] = (2018, 2024),
max_papers: int = 1000,
min_edge_weight: int = 2,
) -> nx.Graph:
"""
Build a co-authorship network for a research topic from OpenAlex.
Each node is an author; edge weight equals the number of papers co-authored
within the specified year range.
Args:
topic: Search query string for the topic.
years: Tuple (from_year, to_year) inclusive.
max_papers: Maximum papers to fetch (impacts runtime).
min_edge_weight: Minimum co-authored papers to include an edge.
Returns:
NetworkX Graph with node attributes: name, works_count, citations;
and edge attribute: weight.
"""
filter_str = (
f"default.search:{topic},"f"publication_year:{years[0]}-{years[1]}"
)
works = _fetch_all_works(
filter_str=filter_str,
select="id,title,authorships,cited_by_count",
max_results=max_papers,
)
edge_weights: Dict[Tuple[str, str], int] = defaultdict(int)
node_attrs: Dict[str, dict] = {}
for work in works:
authorships = work.get("authorships", [])
author_ids = []
for a in authorships:
author = a.get("author") or {}
aid = (author.get("id") or"").split("/")[-1]
aname = author.get("display_name", "")
if aid:
author_ids.append(aid)
if aid notin node_attrs:
node_attrs[aid] = {
"name": aname,
"works_count": 0,
"citations": 0,
}
node_attrs[aid]["works_count"] += 1
node_attrs[aid]["citations"] += work.get("cited_by_count", 0)
# Add edge for every pair of co-authorsfor i inrange(len(author_ids)):
for j inrange(i + 1, len(author_ids)):
a, b = sorted([author_ids[i], author_ids[j]])
edge_weights[(a, b)] += 1
G = nx.Graph()
for aid, attrs in node_attrs.items():
G.add_node(aid, **attrs)
for (a, b), weight in edge_weights.items():
if weight >= min_edge_weight:
G.add_edge(a, b, weight=weight)
print(
f"Co-authorship network: {G.number_of_nodes()} authors, "f"{G.number_of_edges()} edges (min_weight={min_edge_weight})"
)
return G
defplot_coauthorship_network(
G: nx.Graph,
top_n: int = 50,
output_path: Optional[str] = None,
) -> plt.Figure:
"""
Visualize the largest connected component of a co-authorship network.
Nodes are sized by citation count; edges by co-authorship weight.
Community detection uses the Louvain algorithm via networkx.
Args:
G: Co-authorship graph from build_coauthorship_network().
top_n: Show only the top-N authors by citations for clarity.
output_path: Optional file path to save the figure (PNG/PDF/SVG).
Returns:
Matplotlib Figure object.
"""# Select top-N authors by citations
citations = nx.get_node_attributes(G, "citations")
top_nodes = sorted(citations, key=citations.get, reverse=True)[:top_n]
subG = G.subgraph(top_nodes).copy()
# Community detectiontry:
from networkx.algorithms.community import greedy_modularity_communities
communities = list(greedy_modularity_communities(subG))
node_community = {}
for idx, comm inenumerate(communities):
for node in comm:
node_community[node] = idx
except Exception:
node_community = {n: 0for n in subG.nodes()}
pos = nx.spring_layout(subG, seed=42, k=0.5)
node_sizes = [max(50, citations.get(n, 0) / 10) for n in subG.nodes()]
node_colors = [node_community.get(n, 0) for n in subG.nodes()]
edge_widths = [subG[u][v]["weight"] * 0.5for u, v in subG.edges()]
names = nx.get_node_attributes(subG, "name")
fig, ax = plt.subplots(figsize=(14, 10))
nx.draw_networkx_edges(subG, pos, width=edge_widths, alpha=0.3, ax=ax)
nx.draw_networkx_nodes(
subG, pos, node_size=node_sizes,
node_color=node_colors, cmap=cm.tab20, alpha=0.85, ax=ax,
)
nx.draw_networkx_labels(
subG, pos,
labels={n: names.get(n, n)[:20] for n in subG.nodes()},
font_size=6, ax=ax,
)
ax.set_title(f"Co-authorship Network (top {top_n} authors by citations)")
ax.axis("off")
fig.tight_layout()
if output_path:
fig.savefig(output_path, dpi=150)
print(f"Saved network plot to {output_path}")
return fig
3.4 Co-Citation and Bibliographic Coupling
defcompute_cocitation_matrix(
works: List[dict],
top_n: int = 100,
) -> pd.DataFrame:
"""
Compute a co-citation matrix: how often two papers are cited together.
Co-citation strength(A, B) = number of papers in the corpus that cite both A and B.
Args:
works: List of work dicts with 'referenced_works' field from OpenAlex.
top_n: Return only the top-N most co-cited pairs as a DataFrame.
Returns:
DataFrame with columns: paper_a, paper_b, cocitation_count.
"""# Build inverted index: reference -> set of citing papers
citing: Dict[str, set] = defaultdict(set)
for work in works:
work_id = work.get("id", "")
for ref in work.get("referenced_works", []):
citing[ref].add(work_id)
# Count co-citations for all pairs of references
ref_list = list(citing.keys())
cocitation: Dict[Tuple[str, str], int] = defaultdict(int)
for citing_work_id inset().union(*citing.values()):
refs_cited_by_this = [r for r, citers in citing.items() if citing_work_id in citers]
for i inrange(len(refs_cited_by_this)):
for j inrange(i + 1, len(refs_cited_by_this)):
a, b = sorted([refs_cited_by_this[i], refs_cited_by_this[j]])
cocitation[(a, b)] += 1
rows = [
{"paper_a": a, "paper_b": b, "cocitation_count": cnt}
for (a, b), cnt in cocitation.items()
]
df = pd.DataFrame(rows).sort_values("cocitation_count", ascending=False).head(top_n)
return df.reset_index(drop=True)
defcompute_bibliographic_coupling(
works: List[dict],
top_n: int = 100,
) -> pd.DataFrame:
"""
Compute bibliographic coupling strength between pairs of papers.
Coupling(A, B) = number of references shared by both A and B.
Args:
works: List of work dicts with 'referenced_works' from OpenAlex.
top_n: Return only the top-N strongest coupled pairs.
Returns:
DataFrame with columns: paper_a, paper_b, shared_references.
"""
work_refs: Dict[str, set] = {}
for work in works:
wid = work.get("id", "")
refs = set(work.get("referenced_works", []))
if refs:
work_refs[wid] = refs
work_ids = list(work_refs.keys())
coupling_rows = []
for i inrange(len(work_ids)):
for j inrange(i + 1, len(work_ids)):
a, b = work_ids[i], work_ids[j]
shared = len(work_refs[a] & work_refs[b])
if shared > 0:
coupling_rows.append({"paper_a": a, "paper_b": b, "shared_references": shared})
df = pd.DataFrame(coupling_rows)
if df.empty:
return df
return df.sort_values("shared_references", ascending=False).head(top_n).reset_index(drop=True)
3.5 Research Front Identification
defidentify_research_fronts(
topic: str,
years: Tuple[int, int] = (2020, 2024),
max_papers: int = 500,
top_fronts: int = 10,
) -> pd.DataFrame:
"""
Identify emerging research fronts for a topic by finding fast-growing
citation clusters using year-over-year citation acceleration.
Args:
topic: Search query string.
years: Year range to consider.
max_papers: Maximum papers to analyse.
top_fronts: Number of research fronts (papers) to return.
Returns:
DataFrame of papers sorted by citation acceleration (citations_per_year).
"""
filter_str = (
f"default.search:{topic},"f"publication_year:{years[0]}-{years[1]}"
)
works = _fetch_all_works(
filter_str=filter_str,
select="id,doi,title,publication_year,cited_by_count,abstract_inverted_index",
max_results=max_papers,
)
current_year = 2026
rows = []
for w in works:
pub_year = w.get("publication_year") or current_year
age = max(1, current_year - pub_year)
citations = w.get("cited_by_count", 0)
rows.append({
"openalex_id": (w.get("id") or"").split("/")[-1],
"doi": (w.get("doi") or"").replace("https://doi.org/", ""),
"title": w.get("title", ""),
"year": pub_year,
"citations": citations,
"citations_per_year": round(citations / age, 2),
"abstract": reconstruct_abstract(w.get("abstract_inverted_index")),
})
df = pd.DataFrame(rows)
df = df.sort_values("citations_per_year", ascending=False).head(top_fronts)
return df.reset_index(drop=True)
3.6 VOSviewer Export
defexport_vosviewer_network(
G: nx.Graph,
output_map: str = "vosviewer_map.txt",
output_network: str = "vosviewer_network.txt",
) -> None:
"""
Export a NetworkX graph to VOSviewer-compatible map and network files.
The map file contains node labels and weights; the network file contains
edge pairs with weights. Both use tab-separated format expected by VOSviewer.
Args:
G: NetworkX Graph with node attribute 'name' and optional
'citations' (used as node weight).
output_map: Path for the VOSviewer map (nodes) file.
output_network: Path for the VOSviewer network (edges) file.
"""# Build integer ID mapping (VOSviewer uses 1-indexed integers)
nodes = list(G.nodes())
node_to_int = {n: i + 1for i, n inenumerate(nodes)}
names = nx.get_node_attributes(G, "name")
citations = nx.get_node_attributes(G, "citations")
withopen(output_map, "w", encoding="utf-8") as f_map:
f_map.write("id\tlabel\tweight\n")
for node in nodes:
nid = node_to_int[node]
label = names.get(node, node)
weight = citations.get(node, 1)
f_map.write(f"{nid}\t{label}\t{weight}\n")
withopen(output_network, "w", encoding="utf-8") as f_net:
f_net.write("from\tto\tstrength\n")
for u, v, data in G.edges(data=True):
uid = node_to_int[u]
vid = node_to_int[v]
strength = data.get("weight", 1)
f_net.write(f"{uid}\t{vid}\t{strength}\n")
print(
f"VOSviewer export: {len(nodes)} nodes -> {output_map}, "f"{G.number_of_edges()} edges -> {output_network}"
)
defget_journal_impact(
issn: str,
from_year: int = 2019,
to_year: int = 2024,
) -> dict:
"""
Retrieve journal-level publication and citation statistics from OpenAlex.
Args:
issn: ISSN of the journal (e.g. '0028-0836' for Nature).
from_year: Start of citation window.
to_year: End of citation window.
Returns:
Dict with keys: display_name, issn, works_count, cited_by_count,
mean_citations_per_paper, top_cited_papers.
"""
source_data = _oa_get(f"/sources/issn:{issn}", {})
source_id = source_data.get("id", "").split("/")[-1]
display_name = source_data.get("display_name", "")
works = _fetch_all_works(
filter_str=f"primary_location.source.id:{source_id},publication_year:{from_year}-{to_year}",
select="doi,title,publication_year,cited_by_count",
max_results=2000,
)
citation_counts = [w.get("cited_by_count", 0) for w in works]
mean_cit = round(np.mean(citation_counts), 2) if citation_counts else0
top_cited = sorted(works, key=lambda w: w.get("cited_by_count", 0), reverse=True)[:10]
top_df = pd.DataFrame([{
"title": w.get("title", ""),
"year": w.get("publication_year"),
"citations": w.get("cited_by_count", 0),
} for w in top_cited])
return {
"display_name": display_name,
"issn": issn,
"works_count": len(works),
"cited_by_count": sum(citation_counts),
"mean_citations_per_paper": mean_cit,
"top_cited_papers": top_df,
}
4. End-to-End Examples
Example 1 — Map the Research Landscape of "Transformer Neural Networks" 2018-2024
# Step 1: Identify research fronts
fronts = identify_research_fronts(
topic="transformer neural networks",
years=(2018, 2024),
max_papers=500,
top_fronts=15,
)
print("Top research fronts (by citations/year):")
print(fronts[["title", "year", "citations", "citations_per_year"]].to_string())
# Step 2: Build co-authorship network for this topic
G = build_coauthorship_network(
topic="transformer neural networks",
years=(2018, 2024),
max_papers=1000,
min_edge_weight=2,
)
# Step 3: Key network statisticsprint(f"\nNetwork density: {nx.density(G):.4f}")
print(f"Average clustering coefficient: {nx.average_clustering(G):.4f}")
top_by_degree = sorted(nx.degree_centrality(G).items(), key=lambda x: x[1], reverse=True)[:5]
names = nx.get_node_attributes(G, "name")
print("\nTop 5 authors by degree centrality:")
for node, centrality in top_by_degree:
print(f" {names.get(node, node)}: {centrality:.4f}")
# Step 4: Visualize
fig = plot_coauthorship_network(G, top_n=50, output_path="transformer_coauthorship.png")
# Step 5: Export to VOSviewer
export_vosviewer_network(G, "transformer_map.txt", "transformer_network.txt")
# Step 6: Fetch author metrics for the highest-centrality author
top_author_id = top_by_degree[0][0]
metrics = get_author_metrics(openalex_author_id=top_author_id)
print(f"\nTop author: {metrics['name']}")
print(f" h-index: {metrics['h_index']}")
print(f" Total citations: {metrics['cited_by_count']}")
print(f" Active years: {metrics['years_active'][0]}–{metrics['years_active'][1]}")
print(f" Top venues: {metrics['top_venues']}")
Example 2 — Analyze Collaboration Patterns of a Specific Research Group
# Suppose we have a list of ORCID identifiers for a research group
group_orcids = [
"0000-0002-1234-5678", # replace with real ORCIDs"0000-0001-9876-5432",
"0000-0003-1111-2222",
]
# Step 1: Collect metrics for each author
group_metrics = []
for orcid in group_orcids:
try:
m = get_author_metrics(orcid=orcid)
group_metrics.append(m)
print(f"{m['name']}: h={m['h_index']}, citations={m['cited_by_count']}")
except Exception as e:
print(f"Could not fetch ORCID {orcid}: {e}")
# Step 2: Build a group-level summary DataFrame
summary = pd.DataFrame([{
"name": m["name"],
"orcid": m["orcid"],
"works_count": m["works_count"],
"cited_by_count": m["cited_by_count"],
"h_index": m["h_index"],
"i10_index": m["i10_index"],
"active_from": m["years_active"][0],
"active_to": m["years_active"][1],
} for m in group_metrics])
print("\nResearch Group Summary:")
print(summary.to_string())
summary.to_csv("group_metrics.csv", index=False)
# Step 3: Check journal impact for journals where group publishes most
all_venues = []
for m in group_metrics:
all_venues.extend(m["works_df"]["venue"].dropna().tolist())
from collections import Counter
top_venues_overall = Counter(all_venues).most_common(5)
print("\nTop publication venues for the group:")
for venue, count in top_venues_overall:
print(f" {venue}: {count} papers")
# Step 4: Plot per-author citation distribution
fig, axes = plt.subplots(1, len(group_metrics), figsize=(5 * len(group_metrics), 4))
iflen(group_metrics) == 1:
axes = [axes]
for ax, m inzip(axes, group_metrics):
citations = m["works_df"]["citations"].clip(upper=500)
ax.hist(citations, bins=30, color="#4C72B0", edgecolor="white")
ax.set_title(m["name"][:25])
ax.set_xlabel("Citations per paper")
ax.set_ylabel("Count")
fig.suptitle("Citation Distributions — Research Group")
fig.tight_layout()
fig.savefig("group_citation_distributions.png", dpi=150)
print("Saved group_citation_distributions.png")
5. Common Errors and Troubleshooting
Error
Cause
Fix
404 Not Found on /authors/orcid:...
ORCID not indexed in OpenAlex
Try /authors?filter=orcid:... search
Empty co-authorship graph
min_edge_weight too high for sparse field
Lower to min_edge_weight=1
KeyError: 'referenced_works'
Field not in select clause
Add referenced_works to the select parameter
Slow pagination (>5 min)
Large topic with many results
Reduce max_papers or use date ranges to split queries
VOSviewer shows no map
File uses wrong separator
Ensure tab (\t) delimiter; do not open .txt as a map file manually
nx.average_clustering hangs
Very large graph
Call on subgraph: G.subgraph(list(G.nodes())[:500])
6. Performance Tips
Parallel author lookups: Use concurrent.futures.ThreadPoolExecutor when fetching
metrics for multiple authors — each call is independent.
Cache raw work lists: Pickle the list returned by _fetch_all_works() so
downstream analyses (co-citation, coupling) can re-run instantly.
Sparse graph storage: For networks with >10 000 nodes use nx.Graph() with
explicit edge pruning; avoid dense adjacency matrices.
Incremental VOSviewer updates: Append new nodes/edges to existing map/network
files rather than rebuilding from scratch each week.
