Asthma adherence task. Activates when extracting structured guideline-concordance signals from an asthma patient's chart — tier 0 (eligibility), tier 1 (control assessment: ACT score, exacerbation history, controller use), tier 2 (management: step therapy,…
LCN compensated-cirrhosis phenotype (Tapper 2025). From a patient's clinical notes and EHR structured data, extract the evidence that decides (Step 1) whether cirrhosis is established — recent biopsy alone, or >=2 of: imaging, liver stiffness, varices,…
Run the Playwright smoke suite against the Studio UI to catch regressions in the session workflow, phase gates, sidebar consistency, and cohort/agent rendering. Use after any UI change to client/src/ui/Workspace/ or before declaring a frontend task complete.…
ACTS Alzheimer's/dementia phenotyping — extract from a patient's clinical notes: impaired cognition (impaired_cognition), the documented APOE genotype (apoe_genotype → ε2/ε3/ε4 allele flags computed), postmenopausal status + last menstrual period, documented…
Drafts a new chart-review guideline package from a research objective and reference materials. Use when the user says "draft a guideline", "create a chart review protocol", "design a phenotype rubric", "I want to validate [condition]", "set up a chart review…
Extracts named entities from a biomedical / clinical text (PubMed abstract, EHR note, etc.) and normalizes each one to a concept_name from the BSO-AD ontology. Uses MCP tools on the `ner_mcp` server to enumerate the supported entity types, fetch the concept…
BSO-AD (Biological / Social / Other determinants of Alzheimer's Disease) NER scope skill. Activates when extracting entities under the BSO-AD ontology — 9 entity-type subtrees covering Demographic, Behavior / Lifestyle, Economic Stability, Education /…
Builds a chart-review guideline interactively, interviewing the reviewer in plain conversational text then drafting the guideline package once enough is known. Use when the user says "build a guideline with me", "help me design a chart review protocol", "I…