qiime2-microbiome-analyzer
QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
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- Dépôt
- a5c-ai/babysitter
- Dernière activité de la source
- 1 juin 2026 à 07:46
- Langue détectée de SKILL.md
- anglais
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Affichage de SKILL.md
SKILL.md
Instructions source · Aperçu en lecture seule- name
- qiime2-microbiome-analyzer
- description
- QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
- allowed-tools
- ["Read","Write","Glob","Grep","Edit","WebFetch","WebSearch","Bash"]
- metadata
- {"version":"1.0","category":"bioinformatics","tags":["metagenomics","microbiome","16s","diversity"]}
- graph
- {"domains":["domain:bioinformatics"],"specializations":["specialization:biomedical-informatics"],"skillAreas":["skill-area:statistical-analysis","skill-area:data-analysis","skill-area:python-data-pipelines"],"workflows":["workflow:experiment-design"],"roles":["role:research-scientist","role:biomedical-engineer"]}
# QIIME2 Microbiome Analyzer Skill
## Purpose
Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis.
## Capabilities
- Demultiplexing and denoising (DADA2)
- Taxonomic classification
- Alpha diversity metrics
- Beta diversity analysis
- Differential abundance testing
- Phylogenetic analysis
## Usage Guidelines
- Use DADA2 for denoising amplicon data
- Select appropriate taxonomic classifier
- Calculate diversity metrics with rarefaction
- Visualize beta diversity with ordination
- Test differential abundance appropriately
- Document pipeline parameters
## Dependencies
- QIIME2
- DADA2
- phyloseq
## Process Integration
- 16S rRNA Microbiome Analysis (16s-microbiome-analysis)
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