| name | Meta-Analysis Source API |
| description | Core orchestration guidelines and MCP interactions for the src/ library. |
Instructions
You are interfacing with the src/ directory of the Active Inference Meta-Analysis project. This directory contains 45+ public APIs spread across 5 submodules.
Agentic Interface (MCP Strategy)
When operating within this workspace, adhere to the following interaction protocols:
- No-Mock Constraint: If you write tests for these modules, you MUST use
pytest-httpserver or local data objects. Do not use mocker.patch or MagicMock.
- Execution Context: Execute modules using the thin orchestrators located in
scripts/, or by running uv run pytest in the tests/ directory. Do not write temporary execution blocks inside src/.
- Data Immutability: The code here processes JSONL and TriG outputs. Ensure you have parsed
manuscript/config.yaml using your file reading tools to understand runtime constraints.
Architecture Guidelines for AI Agents
- Modularity: Business logic never resides in
scripts/. It belongs here.
- Reproducibility: When adding new NLP or analytical functions, ensure RNG seeds are hardcoded (typically
seed=42) to guarantee deterministic analysis.
- Documentation Parity: If you modify any file here, you must run
python3 -m infrastructure.validation.cli markdown to verify nothing was broken.
Refer to the specific SKILL.md in each subdirectory for granular file-level guidance.
