bioskills-cell-annotation

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Mis à jour6 juillet 2026 à 12:06

Automated cell type annotation for preprocessed single-cell data using reference-based and custom classifiers (CellTypist, SingleR, Azimuth, scPred), with confidence filtering, consensus voting, and marker-based validation.

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Source

ai4nucleome

ai4nucleome/BioMaster

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Métiers associésSOC

Basé sur la classification professionnelle SOC

Développeurs de logicielsProfessions informatiques et mathématiques·SOC 15-1252

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4 fichiers

SKILL.md

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name	bioskills-cell-annotation
description	Automated cell type annotation for preprocessed single-cell data using reference-based and custom classifiers (CellTypist, SingleR, Azimuth, scPred), with confidence filtering, consensus voting, and marker-based validation.
domain	single-cell
primary_tool	celltypist
methods	["celltypist","singler","azimuth","scpred","celldex","scanpy","seurat"]
macro_tags	["cell-annotation","reference-mapping","classification","consensus","validation"]
micro_tags	["celltypist","singler","azimuth","scpred","celldex","scanpy","seurat","reference-mapping","custom-model","confidence-filtering","consensus","majority-voting","validation","ari","nmi","marker-genes","input-loading","version-check"]
source	bioskills-cell-annotation
status	active
enabled	true

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name	bioskills-cell-annotation
description	Automated cell type annotation for preprocessed single-cell data using reference-based and custom classifiers (CellTypist, SingleR, Azimuth, scPred), with confidence filtering, consensus voting, and marker-based validation.
domain	single-cell
primary_tool	celltypist
methods	["celltypist","singler","azimuth","scpred","celldex","scanpy","seurat"]
macro_tags	["cell-annotation","reference-mapping","classification","consensus","validation"]
micro_tags	["celltypist","singler","azimuth","scpred","celldex","scanpy","seurat","reference-mapping","custom-model","confidence-filtering","consensus","majority-voting","validation","ari","nmi","marker-genes","input-loading","version-check"]
source	bioskills-cell-annotation
status	active
enabled	true