bioskills-clustering

name	bioskills-clustering
description	Single-cell clustering workflow: PCA dimensionality reduction, k-NN neighbor graph, Leiden/Louvain community detection, UMAP/tSNE embedding, and optional PAGA graph abstraction. Covers Scanpy (Python) and Seurat (R).
domain	single-cell
primary_tool	scanpy
methods	["scanpy","seurat","leiden","louvain","umap","tsne","paga"]
macro_tags	["clustering","dimensionality-reduction","visualization","single-cell"]
micro_tags	["scanpy","seurat","leiden","louvain","umap","tsne","paga","pca","dimensionality-reduction","neighbors","knn-graph","clustering","resolution","visualization","trajectory"]
source	bioskills-clustering
status	active
enabled	true

Bioskills Clustering