bioskills-dmr-detection

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Mis à jour6 juillet 2026 à 12:06

Identify differentially methylated regions (DMRs) from WGBS or methylation-array data using tiling, smoothing, or kernel-based approaches, then refine, annotate, visualize, and export them.

Installation

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Source

ai4nucleome

ai4nucleome/BioMaster

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Métiers associésSOC

Basé sur la classification professionnelle SOC

Biologistes, autresSciences de la vie, physiques et sociales·SOC 19-1029

Explorateur de fichiers

4 fichiers

SKILL.md

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name	bioskills-dmr-detection
description	Identify differentially methylated regions (DMRs) from WGBS or methylation-array data using tiling, smoothing, or kernel-based approaches, then refine, annotate, visualize, and export them.
domain	single-cell
primary_tool	methylKit
methods	["methylKit","bsseq","DMRcate","annotatr","genomation","Gviz","GenomicRanges","rtracklayer"]
macro_tags	["dmr-detection","methylation","differential-methylation","epigenomics","workflow"]
micro_tags	["methylKit","bsseq","DMRcate","annotatr","genomation","Gviz","GenomicRanges","rtracklayer","data-loading","coverage-filter","bismark","tiling","smoothing","qvalue","merge","refinement","granges","annotation","genes","promoters","cpg-islands","visualization","export","bed"]
source	bioskills-dmr-detection
status	active
enabled	true

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name	bioskills-dmr-detection
description	Identify differentially methylated regions (DMRs) from WGBS or methylation-array data using tiling, smoothing, or kernel-based approaches, then refine, annotate, visualize, and export them.
domain	single-cell
primary_tool	methylKit
methods	["methylKit","bsseq","DMRcate","annotatr","genomation","Gviz","GenomicRanges","rtracklayer"]
macro_tags	["dmr-detection","methylation","differential-methylation","epigenomics","workflow"]
micro_tags	["methylKit","bsseq","DMRcate","annotatr","genomation","Gviz","GenomicRanges","rtracklayer","data-loading","coverage-filter","bismark","tiling","smoothing","qvalue","merge","refinement","granges","annotation","genes","promoters","cpg-islands","visualization","export","bed"]
source	bioskills-dmr-detection
status	active
enabled	true