bioskills-enhancer-gene-linking

name	bioskills-enhancer-gene-linking
description	Predict which gene a distal accessible (enhancer) region regulates by combining accessibility activity, 3D contact frequency, and sequence features into a per-(enhancer, gene) score; validate with CRISPRi-FlowFISH.
domain	single-cell
primary_tool	ABC-Enhancer-Gene-Prediction
methods	["ABC","ENCODE-rE2G","FitHiChIP","CRISPRi-FlowFISH","bamCoverage","bedtools","snakemake"]
macro_tags	["enhancer-gene-linking","abc","encode-re2g","hi-c-contact","crispr-validation"]
micro_tags	["abc","encode-re2g","fithichip","crispr-flowfish","bamcoverage","bedtools","snakemake","normalization","scoring","integration"]
source	bioskills-enhancer-gene-linking
status	active
enabled	true

Bioskills Enhancer Gene Linking