bioskills-lineage-tracing

name	bioskills-lineage-tracing
description	Reconstruct cell lineage trees from CRISPR/lentiviral/mitochondrial barcodes and analyze clonal dynamics and fate decisions in single-cell lineage-tracing experiments.
domain	single-cell
primary_tool	cassiopeia
methods	["cassiopeia","cospar","mito_utils","larry","scanpy"]
macro_tags	["lineage-tracing","phylogenetics","clonal-dynamics","crispr-barcodes"]
micro_tags	["cassiopeia","cospar","mito_utils","larry","greedy-solver","ilp-solver","neighbor-joining","bootstrap","transition-map","fate-probability","clonal-expansion"]
source	bioskills-lineage-tracing
status	active
enabled	true

Bioskills Lineage Tracing