bioskills-markers-annotation

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Mis à jour6 juillet 2026 à 12:06

Find differentially expressed marker genes per cluster, visualize them, score gene sets/cell cycle, and manually annotate cell types. Supports Scanpy (Python) and Seurat (R).

Installation

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Source

ai4nucleome

ai4nucleome/BioMaster

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Métiers associésSOC

Basé sur la classification professionnelle SOC

Développeurs de logicielsProfessions informatiques et mathématiques·SOC 15-1252

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4 fichiers

SKILL.md

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name	bioskills-markers-annotation
description	Find differentially expressed marker genes per cluster, visualize them, score gene sets/cell cycle, and manually annotate cell types. Supports Scanpy (Python) and Seurat (R).
domain	single-cell
primary_tool	scanpy
methods	["scanpy","seurat","rank_genes_groups","FindAllMarkers","wilcoxon","score_genes","AddModuleScore","CellCycleScoring"]
macro_tags	["markers","annotation","differential-expression","cell-type","gene-scoring"]
micro_tags	["scanpy","seurat","rank_genes_groups","FindAllMarkers","wilcoxon","score_genes","AddModuleScore","CellCycleScoring","rank-genes","differential-expression","filtering","visualization","dotplot","heatmap","gene-scoring","cell-cycle","module-score","annotation","cell-type","manual-annotation","export","csv"]
source	bioskills-markers-annotation
status	active
enabled	true

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name	bioskills-markers-annotation
description	Find differentially expressed marker genes per cluster, visualize them, score gene sets/cell cycle, and manually annotate cell types. Supports Scanpy (Python) and Seurat (R).
domain	single-cell
primary_tool	scanpy
methods	["scanpy","seurat","rank_genes_groups","FindAllMarkers","wilcoxon","score_genes","AddModuleScore","CellCycleScoring"]
macro_tags	["markers","annotation","differential-expression","cell-type","gene-scoring"]
micro_tags	["scanpy","seurat","rank_genes_groups","FindAllMarkers","wilcoxon","score_genes","AddModuleScore","CellCycleScoring","rank-genes","differential-expression","filtering","visualization","dotplot","heatmap","gene-scoring","cell-cycle","module-score","annotation","cell-type","manual-annotation","export","csv"]
source	bioskills-markers-annotation
status	active
enabled	true