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SKILL.md
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name
opengraphdb
description
Use when user wants to query, traverse, or build a graph database; embedded or HTTP-served; supports Cypher syntax, vector similarity, RAG, RDF round-trip, and MCP tool catalog. Trigger keywords - graph database, knowledge graph, Cypher query, MCP graph, GraphRAG, vector + graph, property graph, RDF, SHACL, time-travel queries, Neo4j alternative, embedded graph, single-file graph.
when_to_use
Trigger this skill whenever the task involves:
- Building or evolving a property graph / knowledge graph that an AI agent owns end-to-end.
- Cypher generation, exploration, schema design, or import against OpenGraphDB.
- Hybrid retrieval: vector kNN + 1-hop graph context + full-text in one round-trip.
- GraphRAG: ingesting documents into a graph and querying back with Cypher.
- Time-travel / bitemporal queries (`AT TIME ...`, `temporal_diff`).
- Wiring an MCP-aware client (Claude Code, Cursor, Goose, Codex) to a single-file embedded graph.
- Migrating from Neo4j / Memgraph / Kuzu where AGPL licensing, JVM dependency, or sidecar overhead is the friction.
Skip this skill when the workload is a Neo4j cluster, a time-series DB, a simple key-value store, or
a managed vector DB (Pinecone, Weaviate) where graph traversal is not part of the access pattern.
OpenGraphDB is a single-file embedded graph database with first-class openCypher, vector
search, full-text search, RDF round-trip, and an MCP server in the core CLI binary.
This skill is the entry point: it covers the cross-cutting workflow an AI agent uses
to drive the database end-to-end. Four narrow sub-skills (data-import, graph-explore,
ogdb-cypher, schema-advisor) cover deeper task-specific guidance.
When to use this skill
A user describes a knowledge graph, property graph, or "graph + vector + text" workload.
The agent needs to ingest, explore, query, evolve, and serve a graph from one process.
A document → entities → graph → Cypher pipeline is on the table (canonical GraphRAG).
An MCP client needs to call a graph database directly; no Python sidecar wanted.
A Neo4j migration is being scoped (Apache 2.0, single-file, AI-native primitives).
Bitemporal / audit-trail queries (AT TIME, temporal_diff) are required.
When NOT to use this skill
The user explicitly wants Neo4j Enterprise / Aura cluster features (causal cluster, Fabric, Browser).
Workload is time-series-first (use TimescaleDB / Prometheus).
Workload is plain KV with no graph access pattern (use sled / RocksDB / Redis).
Strict cross-region replication or > N=4 concurrent writers required today (multi-writer
kernel is a known gap — see "When you hit limits" below).
Pinecone / Weaviate is the right fit because there is no graph traversal in the read path.
Quickstart in 30 seconds
Pick one transport. The same database file works in all three.
Node + immediate edges; faster than hand-rolled neighborhood query.
search_nodes
Keyword search across all string properties.
subgraph
Extract a subgraph around a starting node (depth configurable).
shortest_path
Pre-built shortest-path; faster than Cypher pattern.
vector_search
Semantic similarity via the HNSW index.
text_search
Full-text query via the tantivy index.
temporal_diff
Compare graph state across two timestamps.
import_rdf / export_rdf
Round-trip RDF preserving _uri per node.
agent_store_episode / agent_recall
Agent-memory primitives.
rag_build_summaries / rag_retrieve
GraphRAG community summaries + retrieval.
list_datasets
Show available datasets in the database.
POST /mcp/invoke accepts the unwrapped shape { "name": "<tool>", "arguments": { ... } }.
ogdb mcp --stdio accepts the full JSON-RPC envelope for tools/list + tools/call.
Cypher essentials
OpenGraphDB implements an openCypher subset. The TCK harness in crates/ogdb-tck
enforces a 50% Tier-1 floor across MATCH / RETURN / WHERE / CREATE / DELETE / SET
as a regression gate. Beyond Tier-1 the engine ships OPTIONAL MATCH, MERGE
(with ON CREATE SET / ON MATCH SET), WITH, UNWIND, pattern comprehension,
CASE, aggregations, ordering, CREATE INDEX, and the OpenGraphDB-specific
AT TIME extension.
Minimal cheatsheet
// Read
MATCH (n:Person)-[:KNOWS]->(m:Person) RETURN n.name, m.name
// Write (idempotent — prefer MERGE for any data import)
MERGE (a:Person {name: 'Alice'}) ON CREATE SET a.created_at = timestamp()
MERGE (b:Person {name: 'Bob'})
MERGE (a)-[:KNOWS]->(b)
// Bulk write with parameter list
UNWIND $rows AS row
MERGE (p:Person {id: row.id})
SET p.name = row.name, p.age = row.age
// Aggregation + ordering — RETURN aliases are not visible to ORDER BY
// in this engine; project through WITH first.
MATCH (p:Person)-[:WROTE]->(b:Book)
WITH p.name AS author, count(b) AS books
RETURN author, books ORDER BY books DESC LIMIT 10
// Vector kNN (function form, not custom operator)
MATCH (r:Review)
WHERE vector_distance(r.embedding, $q) < 0.3
RETURN r.text ORDER BY vector_distance(r.embedding, $q) ASC LIMIT 10
// Full-text — same alias rule: project through WITH before ORDER BY
MATCH (a:Article) WHERE text_search(a.body, 'graph database')
WITH a.title AS title, text_score(a.body, 'graph database') AS rel
RETURN title, rel ORDER BY rel DESC
// Time-travel (timestamps in milliseconds)
MATCH (a)-[:KNOWS]->(b) AT TIME 1750000000000 RETURN b
What is not supported (today)
LOAD CSV (use ogdb import or the /import API instead).
shortestPath() Cypher function (use the shortest_path MCP tool).
Variable-length patterns (-[:REL*1..N]->) and named paths (MATCH p = (...)...) — use a fixed-depth chain or call the shortest_path MCP tool.
UNION between query parts — split into two queries and merge client-side.
EXISTS { ... } subquery and the exists((a)-[:R]->(b)) predicate function — rewrite with OPTIONAL MATCH + WHERE x IS NOT NULL.
curl -s -X POST $BASE/rag/search -H 'Content-Type: application/json' -d '{
"query": "alice and bob writing the cookbook",
"embedding": [0.12,-0.04,0.31,0.05,0.22,-0.18,0.09,0.41,
0.15,-0.02,0.27,0.36,-0.11,0.08,0.19,0.04],
"k": 10
}'
If embedding is omitted the server falls back to text-only. dim must match the
index. Optional community_id scopes to a single GraphRAG community summary.
3. Doc ingest + Cypher query (canonical GraphRAG)
curl -s -X POST $BASE/rag/ingest -H 'Content-Type: application/json' -d '{
"title": "alice-bob-collab", "format": "PlainText",
"content": "Alice works with Bob on the OpenGraphDB cookbook."
}'
curl -s -X POST $BASE/query -H 'Content-Type: application/json' \
-d '{"query":"MATCH (p:Person)-[:WORKS_WITH]->(q:Person) RETURN p.name, q.name"}'
4. Time-travel diff
NOW=$(date +%s)
curl -s -X POST $BASE/mcp/invoke -H 'Content-Type: application/json' -d "{
\"name\":\"temporal_diff\",
\"arguments\":{\"timestamp_a\":0,\"timestamp_b\":$NOW}
}"# Returns snapshot_a, snapshot_b, and the diff (node_count / edge_count delta).
agent_store_episode requires agent_id, session_id, content, embedding,
and timestamp (ms-since-epoch); metadata is optional. The schema is enforced
in crates/ogdb-cli/src/lib.rs::execute_mcp_agent_store_episode_tool.
curl -s -X POST $BASE/mcp/invoke -d '{"name":"agent_store_episode","arguments":{
"agent_id":"planner-1",
"session_id":"sess-2026-05-06",
"content":"learned user prefers terse responses",
"embedding":[/* dim must match the index */],
"timestamp":1746489600000
}}' -H 'Content-Type: application/json'
curl -s -X POST $BASE/mcp/invoke -d '{"name":"agent_recall","arguments":{
"agent_id":"planner-1","query_embedding":[/* ... */],"k":5}}' \
-H 'Content-Type: application/json'
6. RDF round-trip (preserves _uri)
ogdb import-rdf mydb.ogdb ontology.ttl # any of: ttl, nt, rdf, owl
ogdb export-rdf mydb.ogdb out.ttl --format turtle
# _uri is restored on export so URIs survive the round-trip.
7. Multi-agent shared KG (over MCP, single-process today)
ogdb serve --http --port 8080 shared.ogdb &
# Each agent calls /mcp/invoke against the same endpoint.# NOTE: kernel is single-writer in 0.5.1 — concurrent writers serialize at# the storage layer. Plan for write-batching, or shard per-agent today and# revisit when the multi-writer kernel ships (see "When you hit limits").
Performance you can expect
Frozen snapshot of OpenGraphDB 0.5.1 baseline (i9-10920X, Linux, N=5 release-build
median, cold cache, 1 warmup pass discarded). Source of truth: documentation/BENCHMARKS.md.
The table below carries forward the 0.4.0 N=5 medianed numbers — zero perf-relevant
code in the 0.4.0 → 0.5.1 window. Re-baseline tracked as a v0.6.0 follow-up.
Honest list of what 0.5.1 does not do well, and how to escalate:
Bulk ingest path is naïve. 254 nodes/s @ 10k+10k single write-tx — 670× behind
Kuzu, 1 150× behind Memgraph at the same scale. Workaround: batch via UNWIND inside
one write-tx, or use POST /import for >10k rows. Tracked: BENCHMARKS §4.1.
Single-writer kernel. Concurrent writers serialize. The published
concurrent_rate figure is per-DB-per-thread, mechanical. Workaround today:
shard per agent, or queue writes through a single coordinator. Multi-writer
MVCC tracked: BENCHMARKS §4.6.
Mutation p99.9 = 720 ms tail. 56× ratio between p99 (16 ms) and p99.9 hints
at a flush / page-cache pause. Don't put per-token writes on the hot path of a
user-facing latency-SLA flow until profiled.
Cypher coverage is a subset. No LOAD CSV, no shortestPath() function,
limited CALL/YIELD. Most APOC code does not port. See
references/cypher-coverage.md for the
authoritative grid.
No external openCypher TCK pass-rate is published. Only the in-tree 50%
Tier-1 floor is enforced today. Run cargo run --release -p ogdb-tck -- /path/to/openCypher/tck
yourself if you need a number.
Bolt is v1 only. Modern Neo4j drivers may negotiate v4/v5 first. Use the
HTTP /query endpoint for clean compatibility.
No causal cluster / cross-region replication — by design. If that's a hard
requirement, this engine is not the right fit.
Common pitfalls
RETURN of a bare node returns its id, not its properties. Use RETURN n.name
or RETURN properties(n) when you need the body.
Schema migration: don't rename labels behind a live agent. Use ogdb migrate
with an explicit migration script; don't hot-edit the catalog.
Vector dimensionality is fixed at index creation. Mixing dim=16 query vectors
against a dim=1536 index silently returns nothing — always check the index first.
MCP HTTP endpoint and stdio endpoint accept different envelopes. HTTP
/mcp/invoke takes {name, arguments}; stdio takes the full JSON-RPC
tools/call envelope.
Bearer auth is single-tier (Authorization: Bearer <token>). Don't assume
Neo4j role-based access ports — it doesn't yet.
AT TIME uses milliseconds in the Cypher parser, but the temporal_diff
MCP tool takes seconds. Mismatch = empty snapshot.
CREATE is not idempotent. Always prefer MERGE for any import or
re-runnable workflow. Re-running CREATE produces duplicates.
User describes a domain and wants a graph schema — covers eight modeling best practices, six anti-patterns, index selection, RDF mapping with _uri preservation.
This master skill is enough for the cross-cutting workflow. Descend into a sub-skill
only when the task is dominated by one of the four narrow concerns.
Multi-agent shared-KG patterns: today's engine is single-writer-kernel-limited (see documentation/BENCHMARKS.md row 9 / § 4.6). Real multi-writer support is a v0.5 roadmap item; an earlier draft of this entry pointed at documentation/ai-integration/multi-agent-shared-kg.md, which was removed because it claimed Database::open("shared.ogdb") "Just Works across processes" — it does not.
