| name | latex-scaffold |
| description | Convert an existing Markdown manuscript draft into a buildable LaTeX project with canonical structure and build configuration. Use when prose already exists but no LaTeX source tree does. Not for checking template drift in an existing project; use $latex-template. |
| argument-hint | [path/to/draft.md] |
| allowed-tools | Read, Write, Edit, Bash(latexmk*), Bash(mkdir*), Bash(ls*), Glob, Grep |
| skill-dependencies | ["latex"] |
LaTeX Scaffold
Convert an approved Markdown draft into a minimal, compilable LaTeX project. This is a deterministic format conversion — prose quality should already be addressed in the source draft.
When to Use
- Converting a literature review, survey, or report from Markdown to LaTeX for PDF output
- Turning meeting notes or drafts into a formatted document
- Bootstrapping a LaTeX project from an existing outline
- Any time you need md→tex without rewriting content
Inputs
- A Markdown file (
.md) — the draft to convert
- A
.bib file (optional) — if the draft contains citations
Outputs
- A
.tex file ready to compile with latex
- The fail-closed canonical
.latexmkrc if one does not already exist. Invoke the latex pre-flight to copy the canonical artifact; never synthesize selected directives.
Workflow
Step 1: Analyse the Draft
Read the Markdown file and inventory:
- Heading structure (determine
\section / \subsection depth)
- Citations (
[@Key] or [@Key1; @Key2] patterns)
- Tables (Markdown pipe tables)
- Math blocks (
$...$ inline, $$...$$ display)
- Figures (
)
- Code blocks (fenced with language)
- Whether an abstract section exists
Step 2: Create the LaTeX File
Apply these conversion rules:
| Markdown | LaTeX |
|---|
# Title (first H1) | \title{...} |
## Section | \section{...} |
### Subsection | \subsection{...} |
#### Subsubsection | \subsubsection{...} |
## Abstract | \begin{abstract}...\end{abstract} |
Headings starting with Appendix | \appendix once, then \section{...} |
**bold** | \textbf{...} |
*italic* | \emph{...} |
`code` | \texttt{...} |
[@Key] | \citep{Key} |
[@Key1; @Key2] | \citep{Key1,Key2} |
@Key (inline) | \citet{Key} |
$...$ / $$...$$ | Pass through unchanged |
- item | \begin{itemize}\item ...\end{itemize} |
1. item | \begin{enumerate}\item ...\end{enumerate} |
> quote | \begin{quote}...\end{quote} |
 | \begin{figure}[htbp]\includegraphics{path}\caption{caption}\end{figure} |
| Pipe tables | \begin{table}[htbp]\begin{tabular}{...}...\end{tabular}\end{table} |
| Fenced code blocks | \begin{verbatim}...\end{verbatim} |
--- (horizontal rule) |
Preamble Template
\documentclass[a4paper,11pt]{article}
\usepackage[a4paper,margin=1in]{geometry}
\usepackage{hyperref}
\hypersetup{colorlinks=true,linkcolor=blue,citecolor=blue,urlcolor=blue}
\usepackage{booktabs}
\usepackage{tabularx}
\usepackage{graphicx}
\usepackage{amsmath,amssymb}
\usepackage{enumitem}
\usepackage[backend=biber,style=authoryear,natbib=true]{biblatex}
\addbibresource{references.bib}
\title{...}
\author{...}
\date{\today}
\begin{document}
\maketitle
% content here
\printbibliography
\end{document}
Adjust the preamble based on what the draft actually uses (e.g., skip graphicx if no figures). The natbib=true option provides \citet/\citep compatibility. If the project already uses natbib (e.g., with a journal .bst file), keep natbib — but for new scaffolds, biblatex is the default.
Step 3: Strip Markdown Residue
After conversion, scan the .tex file for any remaining Markdown syntax:
## heading markers
** bold markers
[@ citation markers
- Pipe
| table syntax
![ image markers
These indicate incomplete conversion — fix them.
Step 4: Wire Bibliography
- If a
.bib file exists in the project, point \addbibresource{} to it
- If the project has a
references.bib, use that
- If no
.bib exists but citations are present, create placeholder comments: % TODO: create .bib with keys: Key1, Key2, ...
- Ensure
\printbibliography is at the end of the document (not \bibliography{})
Step 5: Compile and Verify
Run latex to compile. Verify:
Rules
- No content rewriting — this is format conversion only. Do not improve prose, fix grammar, or reorganise sections.
- Preserve all content — every paragraph, figure reference, and citation in the draft must appear in the
.tex output.
- Strip heading numbering — if the draft has numbered headings like
1.2 Methods, let LaTeX handle the numbering (just use \subsection{Methods}).
- Use
latex for compilation — never bare pdflatex or latexmk without out/ directory.
- Bold caption lines like
**Table 1. Description** immediately before a pipe table should become \caption{Description} inside a table float.
Cross-References
| Skill | When to use alongside |
|---|
latex | Compile the scaffolded .tex file |
latex | For manual compilation config and .latexmkrc setup |
bib-validate | After scaffolding to verify all citation keys resolve |
proofread | After scaffolding for grammar and consistency check |
latex-template | After scaffolding to verify preamble aligns with the working paper template |
Citation Contract
- Paperpile is the only source of truth for committed citation keys and BibTeX metadata.
- Before writing
\cite{key}, verify with paperpile get-item key and paperpile export-bib key.
- Resolve unknowns in order: DOI lookup → Paperpile substring search →
refpile semantic search → Paperpile verify.
- A DOI miss is not non-membership; continue with title/author search and refpile.
- If unresolved, write
\CiteTodo{slug}{title/author/year/DOI hint} — never a guessed key.
- Drafting sub-agents must not write/edit the active
.bib; only the orchestrator regenerates it from Paperpile exports.
- Stage genuine new refs under
.paperpile-import/ for manual Paperpile import; don't cite until Paperpile mints the key.
- Run
scripts/bib/citation_lint.py before commit; zero placeholders, zero non-Paperpile keys, zero hand-authored metadata.
See rules/paperpile-citations.md for the full workflow.