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SkillsMP a collecté 11 skills depuis geneontology/go-ontology. Ouvrez un skill pour examiner sa source et ses détails.
Affichage de 11 skills collectés sur 11.
Use whenever you run a Makefile target (e.g. `make travis_build`, `make test`, `make reasoned.ofn`) or any one-off ROBOT / owltools / dosdp-tools / scala-cli command derived from a Makefile recipe. These must run inside the pinned ODK Docker image, not…
Langue du texte source : anglais
For reading, writing, debugging, or extending Soufflé Datalog (`.dl`) programs in this repo — the layered ontology QC program under `src/util/qc/`, the `basic-cycles.tsv` cycle check, taxon-constraint materialization, and the relation-diff CI report. Covers…
Langue du texte source : anglais
For reviewing a pull request against the GO ontology, whether from a local checkout or from the automated reviewer in CI. Covers what to check, how to grade severity, and how to report coverage honestly. Use whenever asked to review, critique, or check a PR…
Langue du texte source : anglais
Use the /research skill when performing background research from the literature or the web to create a RESEARCH.md file; also covers use of `deep-research-client`
Langue du texte source : anglais
For working with GO taxon constraints (TCs) using onlyin:/neverin: superclass assertions
Langue du texte source : anglais
For handling the process around obsoleting GO terms. This is a complex process involving substantial analysis of impact, both on existing terms that reference to the to-be-obsoleted term, and on annotations
Langue du texte source : anglais
For working with any terms referencing chemical entities (CHEBI). CHEBI has some unusual properties that are counter-intuitive, so always use this skill to plan or check work that involves a chemical entity or CHEBI IDs, whether a new term, or significant…
Langue du texte source : anglais
Use this skill when planning to create new ontology terms or modify existing ones to ensure proper design pattern compliance. This skill should be used proactively during issue planning to identify appropriate design patterns before term creation begins. No…
Langue du texte source : anglais
Use this to search for relevant terms in external ontologies. NEVER guess ontology terms or term IDs, always confirm using this skill. The general methodology is to use `obo-grep.pl`
Langue du texte source : anglais
For working with mappings (dbxrefs) in GO.
Langue du texte source : anglais
For working with any terms in the catalytic activity branch; these often correspond to RHEA or EC terms
Langue du texte source : anglais