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clawhub-installer Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed.
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Installer avec Codex ou Claude Copiez ce prompt, collez-le dans Codex, Claude ou un autre assistant, puis laissez-le vérifier la page du skill et l'installer pour vous.
Afficher les détails du prompt Une commande directe contourne le prompt de vérification. Examinez la source avant de l'exécuter.
npx skills add https://github.com/GPTomics/bioSkills --skill clawhub-installerLa commande reste sur une seule ligne. Faites défiler horizontalement pour la vérifier avant de la copier.
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Télécharger Zip Téléchargement... Plus depuis ce dépôt Create and manipulate Seq, MutableSeq, and SeqRecord objects using Biopython. Use when creating sequences from strings, modifying sequence data in-place, building annotated records for file output, or debugging post-1.78 Bio.Alphabet and immutability errors.
bio-transcription-translation Transcribe DNA to RNA and translate to protein using Biopython, with NCBI codon-table selection, CDS validation, and six-frame ORF finding. Use when converting a CDS or ORF to its amino-acid sequence, selecting a non-standard (mitochondrial, bacterial, ciliate) genetic code, validating a coding sequence, or scanning all reading frames.
bio-crispr-screens-bagel-essentiality Identifies essential genes from CRISPR-Cas9 fitness screens using BAGEL2 (Kim & Hart 2021 Genome Med), a Bayesian classifier scoring per-gene Bayes Factors via log-likelihood ratios over per-sgRNA fold changes, calibrated against CEGv2 core-essentials (Hart 2017 G3, ~684 genes) and NEGv1 non-essentials (Hart 2014, ~927 genes). Covers the fc + bf + pr workflow, the linear-extrapolation improvement over BAGEL1 truncation, multi-target off-target correction, tumor-suppressor sensitivity (BAGEL2 detects enrichment), and BF calibration (BF >6 ≈ 90% posterior per Hart 2017; ~5% FDR by BAGEL convention). Use when classifying essential vs non-essential genes, calibrating BAGEL2 thresholds against PR curves, identifying tumor suppressors alongside essentials, comparing BAGEL2 hits to MAGeCK / drugZ, or generating publication-quality essentiality calls.
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2 fichiers name clawhub-installer description Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed. metadata {"openclaw":{"requires":{"bins":["git"],"anyBins":["python3","Rscript"]},"os":["darwin","linux"],"emoji":"🧬"}}
bioSkills Installer
Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis.
Installation
Run the bundled install script to download and install all bioSkills:
bash scripts/install-bioskills.sh
Or install only specific categories:
bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"
What Gets Installed
425 skills across 62 categories covering:
Sequence & Alignment (40): sequence-io, sequence-manipulation, alignment, alignment-files, database-accessRead Processing (11): read-qc, read-alignmentRNA-seq & Expression (14): differential-expression, rna-quantification, expression-matrixSingle-Cell & Spatial (25): single-cell, spatial-transcriptomicsVariant Analysis (21): variant-calling, copy-number, phasing-imputationEpigenomics (25): chip-seq, atac-seq, methylation-analysis, hi-c-analysisMetagenomics & Microbiome (13): metagenomics, microbiome
Genomics & Assembly (29): genome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design
Regulatory & Causal (13): gene-regulatory-networks, causal-genomics, rna-structure
Temporal & Ecological (11): temporal-genomics, ecological-genomics
Immunology & Clinical (25): immunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics
Specialized Omics (36): proteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy
RNA Biology (20): small-rna-seq, epitranscriptomics, clip-seq, ribo-seq
Phylogenetics & Evolution (16): phylogenetics, population-genetics, comparative-genomics
Structural & Systems (11): structural-biology, systems-biology
Screens & Cytometry (22): crispr-screens, flow-cytometry, imaging-mass-cytometry
Pathway & Integration (14): pathway-analysis, multi-omics-integration, restriction-analysis
Infrastructure (39): data-visualization, machine-learning, workflow-management, reporting, experimental-design, long-read-sequencing
Workflows (40): end-to-end pipelines (FASTQ to results)
After Installation Once installed, skills are automatically triggered based on the task at hand. Example requests:
"I have RNA-seq counts from treated vs control samples - find the differentially expressed genes"
"Call variants from this whole genome sequencing BAM file"
"Cluster my single-cell RNA-seq data and find marker genes"
"Predict the structure of this protein sequence"
"Run a metagenomics classification on these shotgun reads"
Source 