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Extract protein sequence of each chain from the protein structure file (pdb format).
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Basé sur la classification professionnelle SOC
| name | molclaw-extract-chains |
| description | Extract protein sequence of each chain from the protein structure file (pdb format). |
| license | MIT license |
| metadata | {"skill-author":"PJLab"} |
Note:
molclaw-file-transfer before execution.molclaw-pdbfixer before execution.molclaw-scp-server to complete tool invocation.Use tool extract_pdb_chains to extract protein chains from the repaired pdb file
Tool description:
Extract the amino acid sequence of each chain from the PDB file.
Args:
pdb_file_path (str): Path to input pdb file
Return:
status (str): success/error
msg (str): message
chains (List[dict]): List of dict, each containing the keys 'chain' and 'sequence'.
--chain (str): Chain ID
--sequence (str): Sequence string
Tool usage:
response = await client.session.call_tool(
"extract_pdb_chains",
arguments={
"pdb_file_path": fixed_pdb_path
}
)
result = client.parse_result(response)
protein_chains = result['chains']
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