run-orchestration

name	run-orchestration
description	Use when an agent must batch-submit, poll, summarize, retry, or compare long-running VirusPrimerPro Agent API jobs without holding a long HTTP connection open.

Run Orchestration

Use this when testing parameter sweeps, comparing modes, or running long jobs. The API is asynchronous: submit, poll, summarize, download artifacts.

Create Batch

python agentskill/scripts/run_orchestrator.py make-batch \
  --msa aligned.fasta \
  --mode primer_site \
  --mode phylo_guide \
  --profile standard \
  --output batch.json

Submit And Poll

python agentskill/scripts/run_orchestrator.py submit-batch \
  --batch-json batch.json \
  --output batch_state.json

python agentskill/scripts/run_orchestrator.py poll-batch \
  --state-json batch_state.json \
  --output batch_state.polled.json

For monitoring loops, use --watch --poll-interval 30; do not keep one request open for computation time.

Summarize

python agentskill/scripts/run_orchestrator.py summarize-runs \
  --input batch_state.polled.json \
  --output batch_summary.json