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pseudonymizing-for-gdpr

Apply GDPR-grade pseudonymization to clinical or personal text with OpenMed, keeping a separately-held re-linkage key so the data can be controlled-re-linked later. Use when the user must process EU personal/health data under GDPR, asks for pseudonymization vs anonymization, needs Art. 4(5) / Art. 9 / Recital 26 alignment, wants a reversible mapping/key vault held apart from the data, or needs controlled re-linkage. Covers openmed.deidentify(policy="gdpr_pseudonymization", keep_mapping=True), storing the mapping in a separate key vault, reidentify() for authorized re-linkage, and retention. Pairs after extracting-pii-entities and configuring-privacy-policies.

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maziyarpanahi/openmed
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20 juillet 2026 à 09:27
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SKILL.md
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name
pseudonymizing-for-gdpr
description
Apply GDPR-grade pseudonymization to clinical or personal text with OpenMed, keeping a separately-held re-linkage key so the data can be controlled-re-linked later. Use when the user must process EU personal/health data under GDPR, asks for pseudonymization vs anonymization, needs Art. 4(5) / Art. 9 / Recital 26 alignment, wants a reversible mapping/key vault held apart from the data, or needs controlled re-linkage. Covers openmed.deidentify(policy="gdpr_pseudonymization", keep_mapping=True), storing the mapping in a separate key vault, reidentify() for authorized re-linkage, and retention. Pairs after extracting-pii-entities and configuring-privacy-policies.
license
Apache-2.0
metadata
{"project":"OpenMed","category":"de-identification","pairs":"after","version":"1.0"}
# Pseudonymizing for GDPR Pseudonymization under the GDPR (Art. 4(5)) means processing personal data so it "can no longer be attributed to a specific data subject without the use of **additional information**" — provided that additional information (the re-linkage key) is "kept separately and is subject to technical and organisational measures." Crucially, **pseudonymized data is still personal data** (Recital 26): re-linkage is possible, so GDPR still applies. This is the opposite of anonymization, where re-identification is irreversibly prevented and the data falls outside the GDPR. OpenMed implements this with a single reversible de-identification pass plus a mapping you store **away from the data**. This skill covers producing that mapping, vaulting the key separately, and re-linking under authorization. ## When to use - You process EU residents' personal or special-category health data (Art. 9) and need a lawful, reversible safeguard rather than full anonymization. - You need to keep a record-linkage capability (e.g. to recontact a patient, reconcile longitudinal records, or honor a Subject Access Request) but must separate the linkage key from the working dataset. - A reviewer asks for the pseudonymization-vs-anonymization distinction in writing, or for the ENISA-style "additional information kept separately" control to be demonstrable. Do **not** use this when the goal is irreversible anonymization for open release — there, drop the mapping entirely and gate residual risk with `reviewing-reidentification-risk`. Pseudonymization keeps a key; anonymization must not. ## Quick start ```python import openmed # Synthetic record — never run this skill's examples on real PHI. note = "Patient Maria Schmidt (ID 4471) seen 2024-03-02; contact maria@example.de." result = openmed.deidentify( note, method="replace", # realistic surrogates, not [LABEL] holes policy="gdpr_pseudonymization", # bundled GDPR profile keep_mapping=True, # produce the reversible re-linkage map consistent=True, # same input -> same surrogate in the doc seed=20240302, # cross-run reproducibility of surrogates ) pseudonymized_text = result.deidentified_text # safe to process / analyze relink_key = result.mapping # surrogate -> original; SECRET ``` `result.deidentified_text` is the pseudonymized payload. `result.mapping` is the "additional information" GDPR Art. 4(5) requires be kept separately — it is the key that makes re-linkage possible, and therefore the most sensitive artifact in the whole flow. ## Workflow 1. **Choose reversible pseudonymization, not masking.** Use `method="replace"` with `policy="gdpr_pseudonymization"` and `keep_mapping=True`. Replacement surrogates keep the text usable for downstream NLP while remaining non-identifying. `consistent=True` (optionally with `seed=`) makes repeated mentions resolve to one stable surrogate so intra-document linkage survives. 2. **Split the data from the key immediately.** The moment `deidentify` returns, route `result.deidentified_text` to your working store and `result.mapping` to a **separate, access-controlled key vault** — different system, different credentials, different backups. Never persist them in the same row, file, bucket, or log line. This separation is the technical-and-organisational measure that makes the data pseudonymized rather than just "personal data with PII in it." 3. **Process the pseudonymized text freely.** Run `analyze_text`, analytics, model training, or transfer on `deidentified_text`. The key never leaves the vault during ordinary processing. 4. **Re-link only under authorization.** When a lawful basis exists (e.g. an authorized SAR or recontact), fetch the mapping from the vault and call `openmed.reidentify(deidentified_text, mapping)`. Log *that* a re-linkage happened (who, when, why, record id) — but never log the restored plaintext. 5. **Apply retention to the key.** The mapping has its own retention clock. When the lawful basis for re-linkage ends, **destroy the mapping**. Once the key is irreversibly gone and no other re-identification path remains, the remaining text approaches anonymization and GDPR obligations shrink accordingly. Verify that claim with `reviewing-reidentification-risk` before relying on it. ## Hand-off to / from OpenMed - **From** `extracting-pii-entities` / `configuring-privacy-policies`: confirm the detector recall and the active policy profile before pseudonymizing, since any identifier the detector misses leaks into `deidentified_text`. - **OpenMed call:** Python `from openmed import deidentify, reidentify`; the same capability is exposed as MCP tool `openmed_deidentify` and REST `/deidentify`. Pass `policy="gdpr_pseudonymization"`, `keep_mapping=True`. - **To** `auditing-deid-leakage`: scan `result.deidentified_text` for residual identifiers before it leaves the boundary — pseudonymization is only as strong as detection. - **To** `reviewing-reidentification-risk`: quasi-identifier (age, ZIP, dates) re-identification still applies to pseudonymized data; score k-anonymity on the output and document residual risk. ## Edge cases & gotchas - **Pseudonymized ≠ anonymized.** As long as `mapping` exists anywhere, the data is personal data under Recital 26. Do not market a `keep_mapping=True` output as "anonymous." - **The mapping is the crown jewel.** A leaked mapping re-identifies everything at once. Treat it as the highest-sensitivity secret: encrypt at rest, restrict access, audit reads. - **Surrogates can still carry quasi-identifiers.** `method="replace"` swaps the identifier text, but free-text age, rare diagnosis, ZIP, or admission dates remain. Pseudonymization does not address singling-out; pair with QI risk scoring. - **Reproducibility cuts both ways.** A fixed `seed` makes surrogates stable across runs (good for linkage) but means an attacker who learns the seed and algorithm can reproduce surrogates — keep the seed with the key, not the data. - **Special-category data (Art. 9).** Health data needs a lawful basis *before* processing; pseudonymization is a safeguard, not a lawful basis on its own. - **Local-first.** Run entirely on-device. Do not send EU personal data to a cloud de-identification service to satisfy GDPR — that may itself be a transfer. ## Standards & references - GDPR Art. 4(5) — definition of pseudonymization: https://gdpr-info.eu/art-4-gdpr/ - GDPR Art. 9 — processing of special categories (health) data: https://gdpr-info.eu/art-9-gdpr/ - GDPR Recital 26 — pseudonymous data is personal data; anonymization test: https://gdpr-info.eu/recitals/no-26/ - ENISA, *Pseudonymisation techniques and best practices* (2019): https://www.enisa.europa.eu/publications/pseudonymisation-techniques-and-best-practices - EDPB Guidelines on pseudonymisation (01/2025): https://www.edpb.europa.eu/
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