name	genomics-qc
description	FASTQ quality control: Phred quality scores, GC/N content, Q20/Q30 rates, per-base quality profiles, read length distribution, and adapter contamination detection.
version	0.3.0
author	OmicsClaw
license	MIT
tags	["genomics","QC","FastQC","fastp","Trimmomatic"]
metadata	{"omicsclaw":{"domain":"genomics","emoji":"📊","trigger_keywords":["sequencing QC","FastQC","read quality","adapter trimming","fastp"],"allowed_extra_flags":[],"saves_h5ad":false}}

📊 Genomics QC

Without it: Traces of adapters, low-quality reads or overrepresented sequences break downstream assemblies/alignments
With it: Reads are automatically trimmed, masked, and summarized
Why OmicsClaw: Simplifies execution of widely used tools like FastQC and fastp simultaneously

Quality control for genomic sequencing data. Wraps FastQC, MultiQC, and fastp for read-level QC and adapter trimming.

python omicsclaw.py run genomics-qc --demo
python omicsclaw.py run genomics-qc --input <reads.fastq> --output <>

name	genomics-qc
description	FASTQ quality control: Phred quality scores, GC/N content, Q20/Q30 rates, per-base quality profiles, read length distribution, and adapter contamination detection.
version	0.3.0
author	OmicsClaw
license	MIT
tags	["genomics","QC","FastQC","fastp","Trimmomatic"]
metadata	{"omicsclaw":{"domain":"genomics","emoji":"📊","trigger_keywords":["sequencing QC","FastQC","read quality","adapter trimming","fastp"],"allowed_extra_flags":[],"saves_h5ad":false}}

Quality control for genomic sequencing data. Wraps FastQC, MultiQC, and fastp for read-level QC and adapter trimming.

python omicsclaw.py run genomics-qc --demo
python omicsclaw.py run genomics-qc --input <reads.fastq> --output <>

genomics-qc