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SkillsMP a collecté 8 skills depuis microbiomedata/nmdc-ingest-agent. Ouvrez un skill pour examiner sa source et ses détails.
Affichage de 8 skills collectés sur 8.
Use this skill to decide whether a source vocabulary warrants a reusable mapping artifact and, when it does, author a validated SSSOM mapping set (subject/predicate/object with provenance) from a source controlled vocabulary (land-cover classes, habitat…
Langue du texte source : anglais
Use this skill to translate an NCBI BioProject (BioSamples plus SRA runs) into an NMDC-schema Database JSON, then hand curation to the nmdc-env-triad, nmdc-taxon-resolution, nmdc-target-gene and nmdc-schema-reference skills, validate, and emit run notes via…
Langue du texte source : anglais
Use this skill to resolve MIxS env_broad_scale, env_local_scale, and env_medium to ENVO CURIEs via runoak, constrained to the correct anchor classes and the MIxS soil-package valueset. Trigger when an ingest leaves ENVO:00000000 sentinels on biosample…
Langue du texte source : anglais
Use this skill to curate amplicon LibraryPreparation records an NCBI ingest left unfinished: write a description (target plus primers) from the SRA DESIGN_DESCRIPTION on every amplicon library, and select a TargetGeneEnum target_gene for single-gene amplicons…
Langue du texte source : anglais
Use this skill at the end of an ingest or curation run to write a short human-readable RUN_NOTES.md a curator can review and act on: record counts, what resolved deterministically vs by LLM judgment, what was deferred and why, ambiguous cases needing a human…
Langue du texte source : anglais
Use this skill to look up NMDC LinkML slot ranges, value-type wrappers (QuantityValue, ControlledIdentifiedTermValue vs ControlledTermValue) and enum allowed-values via SchemaView before shaping any non-trivial NMDC slot value or diagnosing a validation…
Langue du texte source : anglais
Use this skill before committing ANY predicted or resolved value to an NMDC record: cite a per-sample labeled source, never fabricate a CURIE from memory, omit rather than guess, keep each reason under 12 words, and validate before commit. Read whenever…
Langue du texte source : anglais
Use this skill to resolve organism names to NCBITaxon CURIEs via runoak for samp_taxon, host_taxid, and host_name, applying NMDC's unambiguous-intent rule for host assignment. Trigger when a host or taxon slot is unset or holds free-text needing lifting to a…
Langue du texte source : anglais