mims-harvard

Install and configure ToolUniverse for any use case — MCP server (chat-based), CLI (command line with 14 subcommands), or Python SDK (Coding API with 3 calling patterns). Covers uv/uvx setup, MCP configuration for 12+ AI clients (Cursor, Claude Desktop,…

Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0). ALWAYS consult this skill for any of those — don't answer from memory, because the exact CLI name (agy),…

Install the ToolUniverse Claude Code plugin in one step — provides MCP server with 2,700+ scientific tools, 160+ research skills, slash commands, hooks, and the research agent. Use for first-time plugin install, troubleshooting plugin not loading, verifying…

Add custom local tools to ToolUniverse alongside the 2,700+ built-in tools. Covers JSON-config tools (simplest, no code), Python class tools (REST/SOAP/GraphQL APIs, computational logic), and best-practices for return schemas. Use for wrapping new APIs,…

Install and configure ToolUniverse for any use case — MCP server (chat-based), CLI (command line with 14 subcommands), or Python SDK (Coding API with 3 calling patterns). Covers uv/uvx setup, MCP configuration for 12+ AI clients (Cursor, Claude Desktop,…

Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on Google Antigravity (AGY / Antigravity IDE / Antigravity 2.0). ALWAYS consult this skill for any of those — don't answer from memory, because the exact CLI name (agy),…

Install, set up, verify, update, pin, uninstall, or troubleshoot the ToolUniverse plugin on OpenAI Codex. ALWAYS consult this skill for any of those — don't answer from memory, because the exact marketplace name (mims-harvard/ToolUniverse), the "codex plugin…

Add custom local tools to ToolUniverse alongside the 2,700+ built-in tools. Covers JSON-config tools (simplest, no code), Python class tools (REST/SOAP/GraphQL APIs, computational logic), and best-practices for return schemas. Use for wrapping new APIs,…

Guide for using OptimusKG, the biomedical knowledge graph, through the `optimuskg` Python client. Use this when loading, querying, filtering, or analyzing OptimusKG data — genes, drugs, diseases, phenotypes, anatomy, pathways, and their relationships — as…

Create distinctive, production-grade frontend interfaces with high design quality. Generates creative, polished code that avoids generic AI aesthetics. Use when the user asks to build web components, pages, artifacts, posters, or applications, or when any…

Enforce synchronization between Kedro node files and catalog YAML files in the OptimusKG project. Use when editing any Python node file under optimuskg/pipelines/*/nodes/, including modifying run() functions, changing node() inputs/outputs,…

Protocol for GPU agents to clone external GitHub repos, install their dependencies, download pretrained weights, and integrate them as featurizers or models inside a focus-area train.py. Use this when a proposal references a GitHub repo or pretrained…

Generic skill for self-organizing multi-agent teams that collaborate on an optimization problem. Agents discuss dimensions, form teams, run experiments, and adapt when stagnating. Uses AnonAPI posts for discussion and workspaces for shared state.

Generate question-specific evaluation criteria using the Qworld Recursive Expansion Tree (RET) algorithm. Decomposes any open-ended question into scenarios, perspectives, and fine-grained binary criteria through structured horizontal and hierarchical…