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SkillsMP a collecté 39 skills depuis Runchuan-BU/BioClaw. Ouvrez un skill pour examiner sa source et ses détails.
Affichage de 39 skills collectés sur 39.
Predict regulatory features, gene structure, and expression directly from DNA sequence using Genomic Intelligence's hosted transformer DNA models - no local GPU. Use when the user has a gene symbol, genomic region, or DNA/FASTA sequence and wants promoter,…
Langue du texte source : anglais
Publication-quality PDF report generation using Typst templates. Produces professional scientific reports with colored section bands, styled tables, figure captions, callout boxes, and page headers/footers.
Langue du texte source : anglais
SEC (size-exclusion chromatography) analysis with peak detection, oligomer classification, and publication-quality PDF report generation via Typst templates. Triggers on "SEC", "size exclusion", "chromatography", "oligomer analysis", "protein assembly", "SEC…
Langue du texte source : anglais
Browse and install community skills from the BioClaw Skills Hub. Use when a user's task is not covered by built-in skills, or when the user asks about available skills, advanced workflows, or specialized analysis pipelines. Triggers on "skills hub", "more…
Langue du texte source : anglais
Audit or refresh a curated pack of eight high-signal omics runtime skills in a BioClaw installation. Use when the user wants stronger built-in guidance for common omics analyses inside agent containers without changing BioClaw source code. Ensures the eight…
Langue du texte source : anglais
ATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.
Langue du texte source : anglais
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
Langue du texte source : anglais
ChIP-seq peak calling and downstream interpretation with MACS3, signal track export, annotation, motif analysis, and differential binding review.
Langue du texte source : anglais
Bulk transcriptomics differential expression with count-aware modeling, design validation, contrast handling, thresholded exports, and publication-ready DE figures.
Langue du texte source : anglais
Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.
Langue du texte source : anglais
Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.
Langue du texte source : anglais
Standard scRNA-seq preprocessing and clustering with Scanpy. Use for QC, normalization, HVG selection, PCA, neighbor graph construction, UMAP, Leiden clustering, and export of an analysis-ready AnnData object.
Langue du texte source : anglais
Structure retrieval, confidence-aware AlphaFold DB usage, coordinate download, PAE and pLDDT interpretation, and structure-guided biological annotation.
Langue du texte source : anglais
Biology research tools reference. Always available inside agent containers.
Langue du texte source : anglais
Run BLAST sequence similarity searches. Use when the user asks to BLAST a sequence, find similar sequences, identify a gene/protein, or do homology search. Triggers on "blast", "sequence similarity", "homology", "identify sequence".
Langue du texte source : anglais
Search PubMed for scientific literature. Use when the user asks to find papers, search literature, look up research, find publications, or asks about recent studies. Triggers on "pubmed", "papers", "literature", "publications", "research on", "studies about".
Langue du texte source : anglais
Query AlphaFold protein structure predictions. Use when user asks about protein structure, 3D structure, protein folding, or structure prediction. Triggers on "alphafold", "protein structure", "3D structure", "folding", "pLDDT", "structure prediction".
Langue du texte source : anglais
Query ClinVar for clinical variant significance. Use when user asks about variant pathogenicity, genetic variants, clinical significance, or disease-causing mutations. Triggers on "clinvar", "pathogenic", "variant significance", "clinical significance",…
Langue du texte source : anglais
Query Ensembl for genomic data. Use when user asks about gene coordinates, genomic sequences, variants, gene structure, exons, transcripts, or species comparison. Triggers on "ensembl", "gene coordinates", "genomic location", "exon", "transcript", "variant…
Langue du texte source : anglais
Query NCBI GEO for gene expression datasets. Use when user asks about RNA-seq datasets, microarray data, expression data, GEO accessions, or finding public datasets. Triggers on "geo", "gene expression omnibus", "expression dataset", "RNA-seq dataset",…
Langue du texte source : anglais
Query InterPro for protein domains and families. Use when user asks about protein domains, functional sites, protein families, domain architecture, or motifs. Triggers on "interpro", "protein domain", "domain architecture", "protein family", "functional…
Langue du texte source : anglais
Query KEGG for biological pathways and gene info. Use when user asks about metabolic pathways, signaling pathways, pathway genes, or KEGG IDs. Triggers on "kegg", "pathway", "metabolic pathway", "signaling pathway", "pathway genes".
Langue du texte source : anglais
Query OpenTargets for drug targets, disease associations, and therapeutic evidence. Use when user asks about drug targets, disease mechanisms, target validation, or drug-disease associations. Triggers on "opentarget", "drug target", "target validation",…
Langue du texte source : anglais
Query RCSB PDB for experimental protein structures. Use when user asks about crystal structures, X-ray, cryo-EM, NMR structures, or PDB IDs. Triggers on "pdb", "crystal structure", "cryo-em", "x-ray structure", "protein crystal", "experimental structure".
Langue du texte source : anglais
Query Reactome for biological pathways and reactions. Use when user asks about signaling cascades, biological processes, pathway diagrams, or reaction details. Triggers on "reactome", "signaling cascade", "biological pathway", "pathway diagram", "reaction…
Langue du texte source : anglais
Query STRING for protein-protein interactions. Use when user asks about protein interactions, interaction networks, binding partners, or interactome. Triggers on "string", "protein interaction", "interaction network", "binding partners", "interactome", "PPI".
Langue du texte source : anglais
Query UniProt protein database. Use when user asks about protein sequences, functions, annotations, domains, or protein identifiers. Triggers on "uniprot", "protein function", "protein sequence", "gene product", "protein info".
Langue du texte source : anglais
Analyze DNA/RNA/protein sequences. Use when the user provides a sequence and asks for analysis, translation, GC content, ORFs, motifs, restriction sites, or primer design. Triggers on "sequence", "translate", "GC content", "ORF", "primer", "restriction",…
Langue du texte source : anglais
Review SDS-PAGE or protein purification gel images using DNA sequence, protein sequence, base-pair length, expected protein size, and lane labels. Use when the user wants to judge whether a gel ran well, whether the main band matches the expected product, or…
Langue du texte source : anglais
Add a Python-only figure reference skill to a BioClaw installation. Use when the user wants publication-quality plotting guidance inside agent containers without adding source-code features. Creates `container/skills/figure/` with a Python-only `SKILL.md` and…
Langue du texte source : anglais
Add Gmail integration to BioClaw. Can be configured as a tool (agent reads/sends emails when triggered from WhatsApp) or as a full channel (emails can trigger the agent, schedule tasks, and receive replies). Guides through GCP OAuth setup and implements the…
Langue du texte source : anglais
Add Telegram as a channel. Can replace WhatsApp entirely or run alongside it. Also configurable as a control-only channel (triggers actions) or passive channel (receives notifications only).
Langue du texte source : anglais
Add new capabilities or modify BioClaw behavior. Use when user wants to add channels (Telegram, Slack, email input), change triggers, add integrations, modify the router, or make any other customizations. This is an interactive skill that asks questions to…
Langue du texte source : anglais
Run initial BioClaw setup. Use when user wants to install dependencies, authenticate WhatsApp, register their main channel, or start the background services. Triggers on "setup", "install", "configure bioclaw", or first-time setup requests.
Langue du texte source : anglais
X (Twitter) integration for BioClaw. Post tweets, like, reply, retweet, and quote. Use for setup, testing, or troubleshooting X functionality. Triggers on "setup x", "x integration", "twitter", "post tweet", "tweet".
Langue du texte source : anglais
Add Agent Swarm (Teams) support to Telegram. Each subagent gets its own bot identity in the group. Requires Telegram channel to be set up first (use /add-telegram). Triggers on "agent swarm", "agent teams telegram", "telegram swarm", "bot pool".
Langue du texte source : anglais
Add voice message transcription to BioClaw using OpenAI's Whisper API. Automatically transcribes WhatsApp voice notes so the agent can read and respond to them.
Langue du texte source : anglais
Convert BioClaw from Apple Container to Docker for cross-platform support. Use when user wants to run on Linux, switch to Docker, enable cross-platform deployment, or migrate away from Apple Container. Triggers on "docker", "linux support", "convert to…
Langue du texte source : anglais
Debug container agent issues. Use when things aren't working, container fails, authentication problems, or to understand how the container system works. Covers logs, environment variables, mounts, and common issues.
Langue du texte source : anglais