ruvnet/rvdna

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Dernière activité source enregistrée: 17 juin 2026 à 21:42

Catalogue SkillsMP mis à jour: 17 octobre 2026 à 00:09

skills collectés: 1

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# rvDNA — AI-Native Genomic Analysis in Pure Rust + WebAssembly [![Rust](https://img.shields.io/badge/Rust-2021-orange?logo=rust)](https://www.rust-lang.org) [![npm](https://img.shields.io/badge/npm-%40ruvector%2Frvdna-cb3837?logo=npm)](https://www.npmjs.com/package/@ruvector/rvdna) [![WebAssembly](https://img.shields.io/badge/WebAssembly-ready-654ff0?logo=webassembly&logoColor=white)](#webassembly--npm) [![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](#license) **`rvDNA`** is an **AI-native genomics engine** in pure Rust (with WebAssembly + Node bindings): biomarker risk scoring, 23andMe genotyping, pharmacogenomics, variant calling, protein prediction, epigenomics, and **HNSW vector search** over genomic profiles — plus the **`.rvdna`** AI-native cognitive-container format. > 20-SNP biomarker risk scoring · streaming anomaly detection · 64-dim profile vectors · 23andMe > genotyping · CYP2D6/CYP2C19 pharmacogenomics · variant calling · protein prediction · HNSW > similarity search — no Python, runs on the edge via WASM. ## Why rvDNA - **Pure Rust, edge-ready** — memory-safe, fast, compiles to native and `wasm32`; runs in the browser, on Node, or on-device. - **Precision-medicine toolkit** — biomarker risk scores, pharmacogenomic star-alleles (**CYP2D6 / CYP2C19**), and 23andMe-style genotyping out of the box. - **Whole pipeline** — alignment (Smith–Waterman), k-mer analysis, variant calling, protein prediction, and epigenomic/temporal modeling. - **Vector-native** — 64-dimensional genomic profile vectors with **HNSW** approximate nearest-neighbor search for similarity and cohort matching. - **`.rvdna` format** — an AI-native cognitive container for genomic data and derived models. ## Capabilities | Module | Capability | |--------|-----------| | `biomarker`, `biomarker_stream` | 20-SNP **biomarker risk scoring** + streaming anomaly detection | | `genotyping` | **23andMe** genotype parsing & calling | | `pharma` | **pharmacogenomics** — CYP2D6 / CYP2C19 star-alleles, drug-response | | `variant` | **variant calling** pipeline | | `protein` | protein structure / function prediction | | `alignment` | Smith–Waterman sequence **alignment** | | `kmer`, `kmer_pagerank` | k-mer analysis & PageRank over genomic graphs | | `epigenomics` | temporal **epigenomic** modeling | | `health` | health & biomarker reporting | ## Install ```bash # Rust cargo add rvdna # Node / browser (NAPI + WASM wrapper) npm install @ruvector/rvdna ``` ## Quick start (Rust) ```rust use rvdna::prelude::*; // Score 20-SNP biomarker risk from a genotype profile. let profile = GenomicProfile::from_23andme("genome.txt")?; let risk = profile.biomarker_risk(); println!("risk vector (64-dim): {:?}", risk.vector()); ``` ## WebAssembly & npm ```js import rvdna from "@ruvector/rvdna"; // biomarker scoring, genotyping and .rvdna I/O — in Node or the browser ``` ## Build ```bash cargo build --release # native lib + rvdna-cli cargo test # test suite cd npm/packages/rvdna && npm run build:napi # native/WASM bindings ``` ## Use cases Consumer genomics & 23andMe analysis · precision medicine & pharmacogenomics · biomarker risk scoring · variant calling pipelines · protein prediction · genomic similarity / cohort search with HNSW · edge & in-browser genomics. ## Layout - [`examples/dna`](examples/dna) — the `rvdna` Rust crate (library + `rvdna-cli`) - [`npm/packages/rvdna`](npm/packages/rvdna) — `@ruvector/rvdna` NAPI/WASM wrapper ## License MIT © Ruvector Team. Part of the [ruvector](https://github.com/ruvnet/ruvector) ecosystem (extracted per ADR-257). Built on the published `ruvector-*` crates (HNSW, attention, GNN, solver). > Research/educational software — **not** a medical device and not for clinical diagnosis.

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wellness-intake

Travailleurs sociaux en soins de santé

Run a safe, structured wellness intake that escalates red flags to professionals.

Langue du texte source : anglais

2026-06-17

Affichage de 1 skills collectés sur 1.

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