メニュー
Infer cis-regulatory peak-peak (and peak-gene) co-accessibility connections from scATAC data using Cicero, ArchR, or SCENIC+, with Hi-C concordance validation.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Load BioMaster as one integrated skill-driven bioinformatics assistant.
BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
| name | bioskills-co-accessibility |
| description | Infer cis-regulatory peak-peak (and peak-gene) co-accessibility connections from scATAC data using Cicero, ArchR, or SCENIC+, with Hi-C concordance validation. |
| domain | single-cell |
| primary_tool | cicero |
| methods | ["cicero","monocle3","archr","scenicplus","signac","genomicinteractions"] |
| macro_tags | ["co-accessibility","cis-regulatory","enhancer-promoter","scatac","metacell"] |
| micro_tags | ["cicero","graphical-lasso","lsi","umap","make_cicero_cds","run_cicero","addCoAccessibility","scenicplus","genomicinteractions","hiccups"] |
| source | bioskills-co-accessibility |
| status | active |
| enabled | true |
