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Predict which gene a distal accessible (enhancer) region regulates by combining accessibility activity, 3D contact frequency, and sequence features into a per-(enhancer, gene) score; validate with CRISPRi-FlowFISH.
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
SOC 職業分類に基づく
Load BioMaster as one integrated skill-driven bioinformatics assistant.
BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
| name | bioskills-enhancer-gene-linking |
| description | Predict which gene a distal accessible (enhancer) region regulates by combining accessibility activity, 3D contact frequency, and sequence features into a per-(enhancer, gene) score; validate with CRISPRi-FlowFISH. |
| domain | single-cell |
| primary_tool | ABC-Enhancer-Gene-Prediction |
| methods | ["ABC","ENCODE-rE2G","FitHiChIP","CRISPRi-FlowFISH","bamCoverage","bedtools","snakemake"] |
| macro_tags | ["enhancer-gene-linking","abc","encode-re2g","hi-c-contact","crispr-validation"] |
| micro_tags | ["abc","encode-re2g","fithichip","crispr-flowfish","bamcoverage","bedtools","snakemake","normalization","scoring","integration"] |
| source | bioskills-enhancer-gene-linking |
| status | active |
| enabled | true |
