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Query STRING for protein-protein interactions, interaction confidence/evidence, interaction partners, and functional enrichment. Use for PPI networks and enrichment of a protein set. Public API, no credential needed.
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インストールを決める前に、SKILL.md と SkillsMP に表示されている付属ファイルをお読みください。
SOC 職業分類に基づく
Codex または Claude でインストール この Prompt をコピーして Codex、Claude、または他のアシスタントに貼り付けると、Skill ページを確認してインストールできます。
直接コマンドでは確認用 Prompt が省略されます。実行前にソースを確認してください。
npx skills add https://github.com/eightmm/codex-science --skill string-ppi-searchコマンドは1行のまま表示されます。コピー前に横へスクロールして全体を確認してください。
ローカルで確認しますか？SkillsMP が現在取得できるファイルをダウンロードできます。
SKILL.md を表示中
Execute auditable quantitative research across preregistered study design, statistical inference, numerical verification, dimensional analysis, uncertainty propagation, counterexample search, and formal proof. Use when a scientific or mathematical question needs actual computation and machine-readable evidence rather than only explanation.
Compare finite actions under uncertainty with explicit states, loss, utility or risk-neutral payoff, priors, experiment likelihoods, and a declared decision criterion. Use for Bayes risk, expected utility or payoff, pure-action minimax, minimax regret, dominance, posterior decision policies, EVPI/EVSI, experiment-cost decisions, and prior-threshold sensitivity; do not use for ordinary statistical testing, causal identification, strategic games, or MDP/POMDP/RL planning.
Compare finite actions under uncertainty with explicit states, loss, utility or risk-neutral payoff, priors, experiment likelihoods, and a declared decision criterion. Use for Bayes risk, expected utility or payoff, pure-action minimax, minimax regret, dominance, posterior decision policies, EVPI/EVSI, experiment-cost decisions, and prior-threshold sensitivity; do not use for ordinary statistical testing, causal identification, strategic games, or MDP/POMDP/RL planning.
| name | string-ppi-search |
| description | Query STRING for protein-protein interactions, interaction confidence/evidence, interaction partners, and functional enrichment. Use for PPI networks and enrichment of a protein set. Public API, no credential needed. |
| license | Apache-2.0 |
Codex-native adaptation of Google DeepMind's string-database skill
(science-skills, Apache-2.0).
Uses the public API directly through Codex's own tools.
uv run, never bare python3. Ask before installs or large downloads.https://string-db.org/api (e.g. json/network, json/interaction_partners, json/enrichment)Resolve a protein first with science_search_string; use STRING directly for
species-constrained networks, partners, enrichment, and multi-protein queries.
/json/get_string_ids), then request the network/partners with a species id and a required_score threshold./json/enrichment.$science-provenance; check claims with $science-review before presenting.