Convert a Snakemake or Nextflow pipeline to a Pegasus workflow
Show available Pegasus workflow skills and which one to use
Review a Pegasus workflow for common pitfalls and best practices
Create a complete Pegasus workflow project from a pipeline description
Generate a wrapper script for a single Pegasus pipeline step
Generate a Kiso experiment.yml configuration file for running Pegasus workflows or shell experiments on cloud/edge/local testbeds. Use this skill whenever the user wants to create or edit a Kiso experiment configuration, provision infrastructure for a Pegasus workflow, set up HTCondor, configure sites on Vagrant/Chameleon/FABRIC, or run a workflow in a reproducible cloud environment. Trigger on: "create experiment.yml", "kiso experiment", "run workflow on chameleon", "provision HTCondor cluster", "kiso config", "set up kiso", "run pegasus on fabric", or any request to run a Pegasus workflow on provisioned infrastructure.
Generate a Dockerfile for a Pegasus workflow's tool stack
Diagnose Pegasus workflow failures from error messages and logs