ZimoLiao/scholaraio

backup

Use when the user wants to back up or restore ScholarAIO data through configured rsync targets, inspect backup plans, or run a dry-run before transferring files.

原文の言語: 中国語

scientific-tool-onboarding

Use when evaluating, adding, or upgrading ScholarAIO support for a scientific computing tool, especially integration-gate review, official docs ingestion, toolref integration, lightweight skill design, and end-to-end CLI verification.

原文の言語: 中国語

setup

Use when the user wants to install, configure, diagnose, or troubleshoot ScholarAIO, including setup check, dependency status, API keys, and bilingual setup flow.

原文の言語: 中国語

academic-writing

Use when the user needs help choosing or organizing an academic-writing workflow by deliverable, stage, or format, including review articles, guided reading, paper sections, PPT or slides, posters, and technical reports.

原文の言語: 複数言語

document

Use when the user wants to create or inspect DOCX, PPTX, or XLSX files, generate a downloadable Office deliverable, or verify its structure and layout warnings with scholaraio document inspect.

原文の言語: 中国語

draw

Use when the user wants diagrams, flowcharts, architecture visuals, data relationships, timelines, concept maps, Mermaid, Graphviz, drawio, or polished paper figures generated from structured text or IR.

原文の言語: 中国語

paper-guided-reading

Use when the user wants guided reading, deep reading, or structured analysis of a single paper, starting from fuzzy keywords or a research question.

原文の言語: 中国語

paper2any

Use when the user explicitly requests Paper2Any or a Paper2Any benchmark for paper-to-figure, PPT, poster, video, DrawIO, PDF-to-PPT, or related workflows through the isolated ScholarAIO sidecar.

原文の言語: 中国語

webextract

Use when a URL or online PDF needs ingestion-ready rendered content, or when host-native URL reading failed because JavaScript/PDF rendering is required; only use it for those cases, not routine web discovery or reading.

原文の言語: 中国語

ingest-link

Use when the user wants to ingest web URLs, online PDFs, rendered web pages, standards, manuals, or articles through qt-web-extractor into the normal document-ingest workflow.

原文の言語: 英語

nature-workflow

Use when the user explicitly asks for Nature Skills, nature-skills, Nature style, Nature-style, Nature Communications, Nature-family, CNS, high-impact journal, or Springer Nature workflows, including Nature figure work, polishing, writing, reviewer critique,…

原文の言語: 英語

patent-search

Use when the user wants USPTO patent discovery, patent metadata lookup, application lookup, or downloadable patent candidates before ingest.

原文の言語: 中国語

index

Use when the user wants to rebuild or refresh ScholarAIO keyword, full-text, FTS5, FAISS, or semantic search indexes after data or metadata changes.

原文の言語: 中国語

search

Use when the user wants to find academic papers, search the local library, run keyword or semantic search, search by author, explore topics, or federate across library, explore databases, and arXiv.

原文の言語: 中国語

import

Use when the user wants to import papers from Endnote XML/RIS, Zotero Web API or local SQLite, attach PDFs, match PDFs to records, or supplement records with PDF content.

原文の言語: 中国語

ingest

Use when the user wants to process new papers, patents, theses, documents, or proceedings from inbox queues into the knowledge base, run the ingest pipeline, or rebuild indexes.

原文の言語: 中国語

literature-review

Use when the user wants to draft a literature review, survey a research area, summarize a field, organize workspace papers, identify gaps, or export review references.

原文の言語: 中国語

publish

Use when the user says a paper, review, report, or LaTeX deliverable is final and wants it archived under published/ or exposed through the static published-paper site.

原文の言語: 英語

arxiv

Use when the user wants to browse arXiv preprints, search arXiv directly, fetch a PDF by arXiv ID or URL, or send a preprint into the ScholarAIO ingest pipeline.

原文の言語: 英語

audit

Use when the user wants to check paper-library data quality, diagnose missing metadata, filename issues, DOI duplicates, title mismatches, or repairable metadata problems.

原文の言語: 中国語

bioinformatics

Use when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools, bcftools, MAFFT, IQ-TREE, or ESMFold.

原文の言語: 中国語

citation-check

Use when the user wants to verify citations in AI-generated or human-written text against the local knowledge base and catch hallucinated, wrong, or missing references.

原文の言語: 中国語

citations

Use when the user asks about highly cited papers, citation rankings, or updating citation counts from external APIs.

原文の言語: 中国語

enrich

Use when the user wants LLM-based metadata enrichment, table-of-contents extraction, L3 conclusion extraction, or abstract backfilling for library papers.

原文の言語: 中国語

explore

Use when the user wants to survey a journal or field, fetch papers from OpenAlex, cluster topics, build exploration embeddings, or search named explore libraries under data/libraries/explore.

原文の言語: 中国語

export

Use when the user needs BibTeX, RIS, Markdown reference lists, filtered citation exports, custom citation styles, or a Markdown-to-DOCX export for sharing.

原文の言語: 中国語

graph

Use when the user asks about citation relationships, references, citing papers, shared references, bibliographic overlap, or graph-style paper connections.

原文の言語: 中国語

gromacs

Use when working on biomolecular molecular dynamics with GROMACS, including system setup, equilibration, production runs, trajectory analysis, or MM/PBSA-style post-processing.

原文の言語: 中国語

insights

Use when the user wants to analyze research behavior, search hot keywords, most-read papers, reading trends, active workspaces, or unread semantic neighbors.

原文の言語: 中国語

lammps

Use when working on classical materials simulations with LAMMPS, including potential selection, shock or deformation setups, thermodynamic runs, or structure analysis for solids and nanomaterials.

原文の言語: 中国語

metrics

Use when the user asks about LLM token usage, API call timing, runtime metrics, cost signals, or performance statistics.

原文の言語: 英語

openfoam

Use when working on CFD cases with OpenFOAM, including solver selection, dictionary setup, mesh workflows, turbulence models, or flow and heat-transfer verification.

原文の言語: 中国語

paper-writing

Use when the user wants help drafting or revising a research paper section, including Introduction, Related Work, Method, Results, Discussion, or Conclusion.

原文の言語: 中国語

patent-fetch

Use when the user has a patent publication number, patent URL, or patent-search result and wants the PDF fetched into the configured patent inbox.

原文の言語: 中国語

poster

Use when the user needs an academic poster, conference poster, poster-style visual summary, section planning, figure-text balance, or poster packaging workflow.

原文の言語: 英語

quantum-espresso

Use when working on first-principles materials calculations with Quantum ESPRESSO, including SCF, band structures, DOS, phonons, electron-phonon coupling, Fermi surfaces, or charge density.

原文の言語: 中国語

rename

Use when the user wants to normalize paper directory names to Author-Year-Title format after metadata correction or audit cleanup.

原文の言語: 中国語

research-gap

Use when the user wants to identify research gaps, open questions, unexplored areas, cross-paper limitations, or future directions from workspace literature.

原文の言語: 中国語

review-response

Use when the user receives peer review comments and wants a rebuttal, response letter, point-by-point reply, or evidence-backed revision response.

原文の言語: 中国語

scientific-runtime

Use when serving scientific CLI tasks through ScholarAIO, especially when the agent should prefer scholaraio toolref, handle partial coverage safely, or avoid turning user work into documentation maintenance.

原文の言語: 英語