encode-api

name	encode-api
description	Access the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.). Use this skill when the user needs to query ENCODE data, search by keywords, or retrieve specific objects by accession ID.
license	MIT
author	AIPOCH

Source: https://github.com/aipoch/medical-research-skills

ENCODE API Skill

This skill allows you to interact with the ENCODE Project database via its REST API.

When to Use

• Use this skill when the request matches its documented task boundary.
• Use it when the user can provide the required inputs and expects a structured deliverable.
• Prefer this skill for repeatable, checklist-driven execution rather than open-ended brainstorming.

Key Features

• Scope-focused workflow aligned to: Access the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.). Use this skill when the user needs to query ENCODE data, search by keywords, or retrieve specific objects by accession ID.
• Packaged executable path(s): scripts/encode_client.py.
• Structured execution path designed to keep outputs consistent and reviewable.

Dependencies

• requests (Install via pip install -r requirements.txt)