bioclaw-hub-spatial-transcriptomics

Estrelas102

Forks13

Atualizado6 de julho de 2026 às 12:06

Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.

Instalação

Instalar com Codex ou Claude Copie este prompt, cole no Codex, Claude ou outro assistente e deixe que ele revise a página da skill e instale para você.

Executar no Manus

Fonte

ai4nucleome

ai4nucleome/BioMaster

Abrir repositório GitHub Ver repositórios do creator

Download

Executar no Manus

Ocupações relacionadasSOC

Baseado na classificação ocupacional SOC

Cientistas biológicos, todos os outrosCiências da Vida, Físicas e Sociais·SOC 19-1029

Explorador de arquivos

4 arquivos

SKILL.md

readonly

name	bioclaw-hub-spatial-transcriptomics
description	Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","squidpy","matplotlib","seaborn"]
macro_tags	["workflow","spatial-transcriptomics","domain-detection","deconvolution","neighborhood-analysis","spatial-visualization"]
micro_tags	["scanpy","squidpy","matplotlib","seaborn","spatial-validation","coordinate-check","barcode-alignment","qc","normalization","hvg-selection","spatial-neighbors","pca","leiden","domain-detection","spatial-autocorrelation","marker-genes","deconvolution","cell-type-scoring","spatial-regression","neighborhood-enrichment","interaction-matrix","ripley","ligand-receptor","spatial-plotting","visualization","publication-figures","export","save-results","csv-output","h5ad"]
source	bioclaw-hub-spatial-transcriptomics
status	active
enabled	true

Bioclaw Hub Spatial Transcriptomics

Mais deste repositório

mesmo repositório

biomaster

ai4nucleome/BioMaster

Load BioMaster as one integrated skill-driven bioinformatics assistant.

2026-07-08102

biomaster

ai4nucleome/BioMaster

BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.

2026-07-08102

bioclaw-cell-annotation

ai4nucleome/BioMaster

Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.

2026-07-06102

bioclaw-hub-cell-communication

ai4nucleome/BioMaster

Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.

2026-07-06102

bioclaw-hub-multiome-scatac

ai4nucleome/BioMaster

Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.

2026-07-06102

bioclaw-hub-trajectory-lineage

ai4nucleome/BioMaster

Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.

2026-07-06102

name	bioclaw-hub-spatial-transcriptomics
description	Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","squidpy","matplotlib","seaborn"]
macro_tags	["workflow","spatial-transcriptomics","domain-detection","deconvolution","neighborhood-analysis","spatial-visualization"]
micro_tags	["scanpy","squidpy","matplotlib","seaborn","spatial-validation","coordinate-check","barcode-alignment","qc","normalization","hvg-selection","spatial-neighbors","pca","leiden","domain-detection","spatial-autocorrelation","marker-genes","deconvolution","cell-type-scoring","spatial-regression","neighborhood-enrichment","interaction-matrix","ripley","ligand-receptor","spatial-plotting","visualization","publication-figures","export","save-results","csv-output","h5ad"]
source	bioclaw-hub-spatial-transcriptomics
status	active
enabled	true