bioclaw-hub-trajectory-lineage

Estrelas102

Forks13

Atualizado6 de julho de 2026 às 12:06

Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.

Instalação

Instalar com Codex ou Claude Copie este prompt, cole no Codex, Claude ou outro assistente e deixe que ele revise a página da skill e instale para você.

Executar no Manus

Fonte

ai4nucleome

ai4nucleome/BioMaster

Abrir repositório GitHub Ver repositórios do creator

Download

Executar no Manus

Ocupações relacionadasSOC

Baseado na classificação ocupacional SOC

Desenvolvedores de softwareInformática e Matemática·SOC 15-1252

Explorador de arquivos

4 arquivos

SKILL.md

readonly

name	bioclaw-hub-trajectory-lineage
description	Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","scvelo","matplotlib"]
macro_tags	["workflow","trajectory","lineage","pseudotime","branching"]
micro_tags	["scanpy","scvelo","matplotlib","topology-check","diffusion-map","neighborhood-graph","root-selection","branch-definition","marker-based-root","pseudotime","dpt","rna-velocity","trajectory-inference","dynamic-genes","branch-markers","differential-expression","pseudotime-genes","visualization","trajectory-overlay","pseudotime-heatmap","branch-visualization"]
source	bioclaw-hub-trajectory-lineage
status	active
enabled	true

Bioclaw Hub Trajectory Lineage

Mais deste repositório

mesmo repositório

biomaster

ai4nucleome/BioMaster

Load BioMaster as one integrated skill-driven bioinformatics assistant.

2026-07-08102

biomaster

ai4nucleome/BioMaster

BioMaster conversational bioinformatics assistant; starts workflows only after execution intent or empty activation.

2026-07-08102

bioclaw-cell-annotation

ai4nucleome/BioMaster

Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.

2026-07-06102

bioclaw-hub-cell-communication

ai4nucleome/BioMaster

Ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.

2026-07-06102

bioclaw-hub-multiome-scatac

ai4nucleome/BioMaster

Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.

2026-07-06102

bioclaw-hub-spatial-transcriptomics

ai4nucleome/BioMaster

Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready spatial maps.

2026-07-06102

name	bioclaw-hub-trajectory-lineage
description	Pseudotime, lineage branching, and state-transition analysis for single-cell data with coherent embeddings and annotations.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","scvelo","matplotlib"]
macro_tags	["workflow","trajectory","lineage","pseudotime","branching"]
micro_tags	["scanpy","scvelo","matplotlib","topology-check","diffusion-map","neighborhood-graph","root-selection","branch-definition","marker-based-root","pseudotime","dpt","rna-velocity","trajectory-inference","dynamic-genes","branch-markers","differential-expression","pseudotime-genes","visualization","trajectory-overlay","pseudotime-heatmap","branch-visualization"]
source	bioclaw-hub-trajectory-lineage
status	active
enabled	true