gtex-search

Retrieve quantitative RNA expression and variant eQTL data from GTEx across 54 non-diseased tissue sites. Use for tissue expression profiles or eQTL lookups. Public API, no credential needed.

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Repositório: eightmm/codex-science
Última atividade na origem: 10 de julho de 2026 às 15:27
Idioma detectado do SKILL.md: inglês
Estrelas: 2
Forks: 0

Opções de instalação

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npx skills add https://github.com/eightmm/codex-science --skill gtex-search

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quantitative-research

Execute auditable quantitative research across preregistered study design, statistical inference, numerical verification, dimensional analysis, uncertainty propagation, counterexample search, and formal proof. Use when a scientific or mathematical question needs actual computation and machine-readable evidence rather than only explanation.

2026-08-04

statistical-decision-analysis

Compare finite actions under uncertainty with explicit states, loss, utility or risk-neutral payoff, priors, experiment likelihoods, and a declared decision criterion. Use for Bayes risk, expected utility or payoff, pure-action minimax, minimax regret, dominance, posterior decision policies, EVPI/EVSI, experiment-cost decisions, and prior-threshold sensitivity; do not use for ordinary statistical testing, causal identification, strategic games, or MDP/POMDP/RL planning.

2026-08-04

cx-statistical-decision-analysis

2026-08-04

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name	gtex-search
description	Retrieve quantitative RNA expression and variant eQTL data from GTEx across 54 non-diseased tissue sites. Use for tissue expression profiles or eQTL lookups. Public API, no credential needed.
license	Apache-2.0

Gtex Search (Codex-native)

Codex-native adaptation of Google DeepMind's gtex-database skill (science-skills, Apache-2.0). Uses the public API directly through Codex's own tools.

Gates (ask before proceeding)

Terms notice: on first use in a workspace, tell the user to review the source's terms of use and record the notice in provenance.
Network / install: read-only public access; be polite about rate limits. Write large responses to a file and parse them; if you write helper code, run it via uv run, never bare python3. Ask before installs or large downloads.

Endpoints

GTEx API https://gtexportal.org/api/v2

Workflow

Query gene expression by tissue via the expression endpoints (resolve the GENCODE/Ensembl gene id first).
Query eQTLs for a gene/variant/tissue via the association endpoints.

Provenance & review: record queries, endpoints, and cited identifiers with $science-provenance; check claims with $science-review before presenting.

Boundaries

Report the GTEx release version and tissue; expression is tissue- and sample-dependent.
Cite only genes/variants actually returned.

gtex-search

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Opções de instalação

Revise os arquivos de origem

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Gtex Search (Codex-native)

Gates (ask before proceeding)

Endpoints

Workflow

Boundaries

Gtex Search (Codex-native)

Gates (ask before proceeding)

Endpoints

Workflow

Boundaries