integration-analysis

name	integration-analysis
description	Analyzes integration surfaces across multi-system ecosystems. From starting-point repos and config directories, discovers connected systems, profiles each one, maps cross-system capabilities, tiers functionality (T1/T2/T3/PRUNE), and generates a layered implementation plan (L0-L3) with dependency-ordered epics.
allowed-tools	["Bash","Read","Write","Glob","Grep","Agent"]

Integration Analysis

Estimated Time: 30-90 minutes (depending on system count, mode, and available inputs) Prerequisites: At least one starting-point repo or config directory Output: Analysis artifacts + dependency-ordered epics in _integration-analysis/

---

Resume Check

Before starting, check for .stackshift-state.json with integration-analysis.status = 'in_progress'. If found, present:

A previous integration analysis was interrupted at Phase {N}.
Resume from Phase {N+1}? (Y/n)

If yes, load the saved system list and generated artifacts, skip completed phases. In YOLO mode, auto-resume from the interrupted phase.

---

Three Modes

YOLO (Fully Automatic)

~30-45 min. No user input after initial system list. Auto-extracts, auto-tiers, marks uncertain items with [AUTO - review recommended].

Guided (Recommended)

~45-60 min. Auto-extracts + 5-10 targeted questions about ambiguous boundaries, pain points, tier assignments, data ownership, and missing context.

Interactive

~60-90 min. Full walkthrough with review and approval at each phase.

---

Phase 0: KICKOFF

0.1 Mode Selection

How should I run the integration analysis?

A) YOLO -- Fully automatic, no questions after setup (~30-45 min)
B) Guided -- Auto-extract + 5-10 targeted questions (recommended) (~45-60 min)
C) Interactive -- Full walkthrough with review at each phase (~60-90 min)

Save selection to state.

0.2 Collect Starting Points

Give me one or more starting points and I'll figure out the ecosystem.
Anything helps -- repos, config dirs, system names, docs, context packs.

Accept any combination of: code paths, config directories, context pack paths, Discover output (.stackshift/ecosystem-map.md), system names, Reverse Engineer docs.

When consuming Discover output, expect ecosystem-map.md to contain a systems table with columns [Name, Confidence, Path, Signals] and a dependency section with system-to-system edges. If the format is unrecognizable, fall back to treating the file as a context document and extract system names manually.

0.3 Discover the Ecosystem

Trace actual API contracts, data flows, and consumer/provider relationships from starting points. Discovery works in two bands:

• In-band: Deep analysis of locally available codebases and docs (high confidence)
• Off-band: GitHub/GitLab searches for systems not found locally (lower confidence)

Step 1: In-band -- Analyze integration surfaces in starting-point repos

For each starting-point repo with local code access, use Task agents in parallel to extract:

• API clients and HTTP calls (reveals consumed systems)
• API contracts exposed (reveals consumers of this system)
• Service interfaces and SDKs (formalized dependencies)
• Config referencing external systems (env vars, endpoint URLs)
• Database and cache connections (shared data stores)
• Event/message contracts (async integration partners)
• Documented integration points (README, ADRs, docs/)
• Reverse Engineer docs if available (highest quality source)

Step 2: In-band -- Locate discovered systems locally

Search common development directories for newly discovered systems. Quote all paths in shell commands to handle spaces and special characters:

SEARCH_DIRS=(
  "$(dirname "$STARTING_REPO")"
  "$HOME/git"
  "$HOME/code"
  "$HOME/src"
  "$HOME/repos"
)

If found locally, repeat Step 1 on the new repo (recursive discovery). MUST NOT exceed recursion depth of 2 hops from user-provided starting points without user confirmation. In YOLO mode, stop at 2 hops and log: "Recursion depth limit reached. Proceeding with discovered systems."

Step 3: In-band -- Analyze config data directories

Parse config files (XML, YAML, JSON, properties) for service endpoints, data sources, feature flags, and override keys.

Step 4: In-band -- Analyze context packs and existing docs

Extract system names, API contracts, and data flow descriptions from context packs or reverse-engineering docs.

Step 5: Off-band -- GitHub/GitLab search for unfound systems

Search for repos matching discovered system names. Auto-clone for deeper analysis:

• YOLO: Auto-clone all discovered repos, re-run Step 1
• Guided: List repos and ask per-repo
• Interactive: Present each repo and ask before cloning

If cloning fails: (1) Mark the system as [NO CODE ACCESS - clone failed: {error}] in the state file. (2) Include the system in Phase 2 profiling using only consumer-side code references and off-band search results. (3) Mark the resulting profile as [PARTIAL - no code access].

Step 6: Build the ecosystem graph

Merge all discovery results. Assign confidence per node:

Level	Criteria
CONFIRMED	User-provided starting point, or user explicitly added
HIGH	In-band tracing from 2+ independent sources
MEDIUM	Single in-band source OR found locally after off-band hint
LOW	Off-band search only, no integration evidence

0.4 Present Discovered Ecosystem

Present the ecosystem as a table of systems with confidence, local code, config, docs, and relationship columns. Include a Mermaid graph of integration edges.

In Guided/Interactive mode, offer: confirm, add systems, remove systems, add context, go deeper.

In YOLO mode: Auto-include CONFIRMED + HIGH, include MEDIUM with [AUTO - review recommended], drop LOW. Skip confirmation.

0.5 Save State and Proceed

Save the confirmed system list to .stackshift-state.json. Update state at every subsequent phase boundary.

Log: "Phase 0 complete -- {N} systems confirmed, {M} integration edges discovered. Proceeding to Phase 1."

---

Phase 1: INVENTORY

Input: System list from Phase 0 Output: system-inventory.md

1. Auto-detect metadata for systems with code access (tech stack, repo status, monorepo detection, description)
2. Import metadata from Discover output if available (confidence scores, dependency hints)
3. Enrich with user-provided notes from Phase 0
4. Classify system roles: Source of Truth, Consumer, Transformer, Orchestrator, Gateway
5. Generate _integration-analysis/system-inventory.md

In Guided/Interactive mode, present enriched inventory for confirmation.

Log: "Phase 1 complete -- system inventory generated for {N} systems. Proceeding to Phase 2."

Update state: "phase": 1.

---

Phase 2: SYSTEM PROFILING

Input: Per-system code repos, config data, Reverse Engineer docs (optional) Output: system-profiles/{name}.md (one per system)

Follow the detailed process in operations/system-profiling.md.

Use Task agents to profile multiple systems concurrently. For each system, extract: capabilities, API surface, data models, config structures, integration points, override/inheritance patterns, auth model, constraints, pain points.

IMPORTANT: If a Task agent fails or times out, mark that system's profile as [FAILED - {reason}] in the state file. Continue with available profiles. In Guided/Interactive mode, inform the user which profiles failed and offer to retry. In YOLO mode, proceed with available profiles and flag missing ones in all downstream artifacts.

Before proceeding to Phase 3, verify the quality checklist in operations/system-profiling.md. In YOLO mode, log any failures but proceed. In Guided/Interactive mode, inform the user.

Log: "Phase 2 complete -- {N}/{M} system profiles generated ({K} failed). Proceeding to Phase 3."

Update state: "phase": 2.

---

Phase 3: CROSS-SYSTEM ANALYSIS

Input: All system profiles from Phase 2 Output: capability-map.md, integration-contracts.md, data-architecture.md

IMPORTANT: Run this phase in the main context. Do not delegate to subagents -- this phase requires synthesizing information from all profiles simultaneously.

Follow the detailed process in operations/cross-system-mapping.md. Generate three artifacts:

• _integration-analysis/capability-map.md -- capabilities mapped across system boundaries
• _integration-analysis/integration-contracts.md -- API surfaces, protocols, auth, schemas
• _integration-analysis/data-architecture.md -- shared entities, field mapping, conflicts, source of truth

Before proceeding to Phase 4, verify the quality checklist in operations/cross-system-mapping.md.

Log: "Phase 3 complete -- {N} capabilities mapped, {M} integration contracts documented, {K} shared entities analyzed. Proceeding to Phase 4."

Update state: "phase": 3.

---

Phase 4: PAIN & FUNCTIONALITY TIERING

Input: Cross-system analysis + user/developer input Output: pain-registry.md, functionality-tiers.md

Follow the detailed process in operations/functionality-tiering.md (Parts 1 and 2).

Assign each pain point a sequential identifier in the format PAIN-NNN (e.g., PAIN-001, PAIN-002) as defined in the operation file.

In Guided mode, present auto-assigned tiers and ask targeted questions about low-confidence assignments. In YOLO mode, auto-assign all tiers.

Before proceeding to Phase 5, verify the quality checklists for Pain Registry and Functionality Tiers in operations/functionality-tiering.md.

Log: "Phase 4 complete -- {N} pain points registered, {M} capabilities tiered (T1:{a} T2:{b} T3:{c} PRUNE:{d}). Proceeding to Phase 5."

Update state: "phase": 4.

---

Phase 5: IMPLEMENTATION LAYERS

Input: Tiered capabilities + dependency matrix Output: implementation-layers.md

Follow the detailed process in operations/functionality-tiering.md (Part 3).

Assemble tiered capabilities into layers: L0 Foundation, L1 Proof, L2 Production, L3 Complete. Include dependency analysis, coverage tracking, and critical path identification.

Before proceeding to Phase 6, verify the quality checklist for Implementation Layers in operations/functionality-tiering.md.

Log: "Phase 5 complete -- implementation layers defined (L0:{a} L1:{b} L2:{c} L3:{d} capabilities). Critical path identified. Proceeding to Phase 6."

Update state: "phase": 5.

---

Phase 6: EPIC/STORY GENERATION (Optional)

Input: Implementation layers + system profiles + capability map Output: _integration-analysis/epics/ directory

Follow the detailed process in operations/epic-generation.md.

Generate technology-agnostic, dependency-ordered epics and stories from the layered plan. Each layer becomes one or more epics with cross-system-aware stories.

In Guided mode, ask before generating. In YOLO mode, auto-generate for all layers.

Log: "Phase 6 complete -- {N} epics, {M} stories generated across {K} layers. Proceeding to Phase 7."

Update state: "phase": 6.

---

Phase 7: RECONCILIATION (Optional -- requires target project)

Input: Tech-agnostic epics from Phase 6 + target project's existing planning artifacts Output: _integration-analysis/reconciliation-report.md, _integration-analysis/open-questions.md

Follow the detailed process in operations/reconciliation.md.

Compare integration analysis findings against the target project's existing plan. Surface gaps, conflicts, incorrect assumptions, over-planning, and sequencing issues.

IMPORTANT: If no target project path is provided (or the target has no planning artifacts), follow the greenfield path defined in operations/reconciliation.md.

Log: "Phase 7 complete -- {N} gaps found, {M} open questions generated ({K} critical). Proceeding to Phase 8."

Update state: "phase": 7.

---

Phase 8: GO-FORWARD PLAN (Optional -- requires target project)

Input: Reconciliation answers + tech-agnostic epics + target project context Output: _integration-analysis/go-forward-plan/

Follow the detailed process in operations/go-forward-plan.md.

Merge integration analysis findings, reconciliation decisions, and target project context into a complete, implementation-ready plan with epics and stories adapted to the target tech stack.

Log: "Phase 8 complete -- go-forward plan generated with {N} epics, {M} stories across {K} layers."

Update state: "phase": 8, "status": "complete".

---

Output Artifacts

All artifacts written to _integration-analysis/ directory:

#	File	Phase	Description
1	system-inventory.md	1	Systems with metadata, ownership, locations, roles
2	system-profiles/{name}.md	2	Per-system: capabilities, APIs, data models, config, constraints, pain
3	capability-map.md	3	Capabilities mapped across systems
4	integration-contracts.md	3	API surfaces, data flows, protocol details
5	data-architecture.md	3	Shared entities, conflicts, source of truth
6	pain-registry.md	4	Pain points per system and at integration boundaries
7	functionality-tiers.md	4	T1/T2/T3/PRUNE per capability
8	implementation-layers.md	5	L0-L3 with dependency matrix and coverage
9	epics/{layer}/*.md	6	Tech-agnostic epics and stories
10	epics/story-dependency-graph.md	6	Story ordering across layers
11	epics/coverage-matrix.md	6	Capabilities to stories mapping
12	reconciliation-report.md	7	Plan vs. reality comparison
13	open-questions.md	7	Prioritized questions for the team
14	go-forward-plan/plan-summary.md	8	Executive summary with phasing and risks
15	go-forward-plan/{layer}/*.md	8	Implementation-ready epics in target tech stack
16	go-forward-plan/delta-from-existing-plan.md	8	What changed and why

---

State Management

MUST save state at each phase boundary. Updates .stackshift-state.json with:

{
  "integration-analysis": {
    "status": "in_progress",
    "phase": 3,
    "mode": "guided",
    "systems_total": 8,
    "systems_profiled": 5,
    "artifacts_generated": ["system-inventory.md", "system-profiles/dvs.md"],
    "started_at": "2026-02-19T10:00:00Z",
    "last_updated": "2026-02-19T10:35:00Z"
  }
}

Phase values: 0 (kickoff), 1 (inventory), 2 (profiling), 3 (cross-system), 4 (tiering), 5 (layers), 6 (epics), 7 (reconciliation), 8 (go-forward), complete.

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Edge Cases

Only 2 Systems

Capability map becomes a side-by-side comparison. Skip dependency matrix visualization. Still identify shared data models and contracts.

System With No Code Access

Profile from available sources (API docs, config data, developer knowledge). Mark profile as [PARTIAL - no code access]. Include in cross-system analysis using consumer-side code.

Extremely Large System Count (15+)

Batch Phase 2 profiling into groups of 5. Group capability map by domain. In YOLO mode, auto-focus on the 5 most interconnected systems first, then expand. In Guided/Interactive mode, suggest focusing.

Conflicting Data Models

Document both representations in data-architecture.md. Flag with severity: BLOCKING, DEGRADING, COSMETIC. Recommend resolution strategy.

Pre-existing Reverse Engineer Docs Are Stale

Check .stackshift-docs-meta.json for commit hash vs. current HEAD. If stale, warn user and suggest /stackshift.refresh-docs first. If refresh not possible, mark profile as [STALE DOCS - generated at commit {hash}].

Circular Dependencies Discovered

If operations/cross-system-mapping.md Step 5 detects circular dependencies, flag them in the dependency matrix with severity. In Guided/Interactive mode, present to user for resolution. In YOLO mode, log and continue.

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Technical Notes

• Use parallel Task agents for Phase 2 profiling (see operations/system-profiling.md)
• Prefer Reverse Engineer docs over re-analyzing code when available
• Config data (XML, YAML, JSON) is often the most reliable source for data model extraction
• IMPORTANT: Cross-system analysis (Phase 3) runs in main context, not subagents
• Mermaid diagrams should stay under 30 nodes for readability
• Pain points from developer input (Guided/Interactive mode) are often more valuable than auto-detected ones
• Implementation layers should each produce a verifiable milestone