medmcp

Workflow for registering NIfTI images to a standard template or within-subject coregistration using ANTsPy

Workflow for whole-brain segmentation and structure volumetry (e.g. thalamic volume) using FastSurfer

Workflow for segmenting anatomical structures and measuring their volumes on CT or MR with TotalSegmentator

Workflow for multiple-sclerosis (MS) white-matter lesion segmentation and lesion-load quantification from a T1w + FLAIR pair using LST-AI

Convert a DICOM directory tree into a BIDS-organised dataset with NIfTI images. Covers single-step NIfTI conversion and full BIDS layout creation.

Placeholder skill — replace with your domain workflow guidance after scaffolding. Rename this directory and the `name` field above to the task this skill covers (e.g. `explore-data`, `segment-brain`, `register-volumes`).