| name | patsnap-biological-modality |
| description | Biological sequence and modality intelligence via Patsnap MCP. |
| homepage | https://open.patsnap.com/marketplace/mcp-servers/biology-modality |
| metadata | {"author":"Patsnap","category":"Life Science","version":"1.0.0","requires":{"mcp_endpoint":"https://connect.patsnap.com/06e741/logic-mcp?apikey=YOUR_API_KEY"}} |
Setup
Get your API Key at https://open.patsnap.com
Patsnap Biology Modality
This skill connects your AI agent to Patsnap's Biology Modality MCP server — providing professional-grade biological sequence and modality analysis capabilities.
With this skill, your agent can navigate the world of large molecules, from sequence-based patent searching to antibody-antigen interaction discovery and multi-omics data retrieval.
Prerequisites
This skill requires the Patsnap Biology Modality MCP server to be configured in your environment:
{
"mcpServers": {
"biology_modality": {
"url": "https://connect.patsnap.com/06e741/logic-mcp?apikey=YOUR_API_KEY",
"type": "streamableHttp"
}
}
}
Get your API key at open.patsnap.com.
For the full list of available tools and input parameters, refer to the official MCP server documentation:
https://open.patsnap.com/marketplace/mcp-servers/biology-modality
Instructions for AI Agents
Step 1: Sequence Identification & Normalization
When a user provides a protein or nucleotide sequence (FASTA format) or a gene name, use the biological normalization tools to resolve the entity to a standard ID or sequence.
Step 2: Sequence-Based Search
- Use Sequence Identity Search to find homologs in patents and literature.
- Use Motif Search to identify specific functional regions within a sequence.
- Filter results by organism, sequence length, and patent publication date.
Step 3: Modality-Specific Analysis
- For Antibodies: Analyze CDR regions and antigen binding affinity.
- For Nucleotides: Investigate gene expression and multi-omics associations.
Step 4: Output Synthesis
Present biological data with:
- Sequence alignments showing identity and gaps.
- Functional annotations (e.g., active sites, PTMs).
- IP landscape summaries for specific sequences.
Example Workflows
Antibody IP Clearance
- Input an antibody heavy/light chain sequence.
- Run sequence identity search across global patent databases.
- Identify patents with high-identity sequences that may pose FTO risks.
Target Discovery Support
- Input a gene or protein name.
- Retrieve associated multi-omics data and expression profiles.
- Search for similar sequences in literature to identify potential functional homologs.
Resources
