cleanup-blastdb-volumes-py

name	cleanup-blastdb-volumes-py
description	Use when managing BLAST database storage by removing unnecessary volume files to reclaim disk space.
disable-model-invocation	true
user-invocable	true

cleanup-blastdb-volumes-py

Quick Start

• Command: cleanup-blastdb-volumes.py -db <dbname> -dbtype <prot|nucl> [-dry-run]
• Local executable: /home/vimalinx/miniforge3/envs/bio/bin/cleanup-blastdb-volumes.py
• Full reference: See references/help.md

When To Use This Tool

• Remove orphaned BLAST database volumes after database updates or alias changes.
• Reclaim disk space when a .pal or .nal alias DB no longer references all volumes on disk.
• Audit what would be deleted first with -dry-run.
• Resolve clutter in BLAST DB directories found through BLASTDB or NCBI config lookup.

Common Patterns

# 1) Preview cleanup for a protein alias database
cleanup-blastdb-volumes.py \
  -db nr \
  -dbtype prot \
  -dry-run

# 2) Remove extra nucleotide volumes after review
cleanup-blastdb-volumes.py \
  -db nt \
  -dbtype nucl