菜单
Triage whether ambient RNA contamination is a plausible explanation for suspicious single-cell expression patterns.
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
基于 SOC 职业分类
| name | ambient_rna_triage |
| description | Triage whether ambient RNA contamination is a plausible explanation for suspicious single-cell expression patterns. |
| category | bio/single_cell_rna |
| version | 1 |
| requires_tools | ["search_knowledge_base","python_repl"] |
| requires_network | false |
| user_invocable | true |
| tags | ["ambient-rna","soup","contamination","triage"] |
| aliases | ["ambient_contamination_check"] |
| species | any |
| modality | single_cell_rna |
| stage | qc |
| stability | stable |
| safety_level | low |
Assess whether ambient RNA contamination is a likely contributor to unexpected marker expression or noisy cluster interpretation.
Use this skill when the user reports improbable marker expression, broad low-level contamination, or suspicious signals in droplet-based single-cell data.
knowledge/ambient-rna-troubleshooting.md with search_knowledge_base.python_repl only if you need to organize a checklist or risk table.