菜单
Build an evidence matrix linking a gene list to a phenotype, pathway, or biological question using literature and local knowledge.
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
基于 SOC 职业分类
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | gene_evidence_matrix |
| description | Build an evidence matrix linking a gene list to a phenotype, pathway, or biological question using literature and local knowledge. |
| category | bio/literature |
| version | 1 |
| requires_tools | ["ncbi_eutils","uniprot_api","search_knowledge_base","python_repl"] |
| requires_network | true |
| user_invocable | true |
| tags | ["evidence","gene-list","phenotype","matrix","literature"] |
| aliases | ["evidence_table_builder"] |
| species | any |
| modality | literature |
| stage | interpretation |
| stability | evolving |
| safety_level | medium |
Summarize how strongly each gene in a list is supported by literature or local knowledge for a specific phenotype, pathway, or mechanism.
Use this skill when the user wants to compare several candidate genes against one biological question, such as exhaustion, apoptosis, interferon response, or cytokine signaling.
search_knowledge_base for any local protocol, note, or playbook relevant to the question.ncbi_eutils to search the gene plus the question.uniprot_api for a concise function check when needed.python_repl to assemble an evidence matrix with fields such as: