- name
- compress
- description
- Vault alignment engine. Detects and fixes 5 types of structural misalignments: broken backlinks, concept fragmentation, entity miscategorization, duplicated entities, and misnamed entities. Delegates all writes to /bedrock:preserve. Supports interactive mode (user confirmation) and cron mode (autonomous mechanical fixes + queued semantic proposals). Use when: "bedrock compress", "bedrock-compress", "align vault", "fix backlinks", "fix misalignments", "/bedrock:compress".
- user_invocable
- true
- allowed-tools
- Bash, Read, Glob, Grep, Skill, Agent
# /bedrock:compress — Vault Alignment Engine
## Plugin Paths
Entity definitions and templates are in the plugin directory, not the vault root.
Use the "Base directory for this skill" provided at invocation to resolve paths:
- Entity definitions: `<base_dir>/../../entities/`
- Templates: `<base_dir>/../../templates/{type}/_template.md`
- Plugin CLAUDE.md: `<base_dir>/../../CLAUDE.md` (already injected automatically into context)
Where `<base_dir>` is the path provided in "Base directory for this skill".
---
## Vault Resolution
Resolve which vault to compress. This skill can be invoked from any directory.
**Step 1 — Parse `--vault` flag:**
Check if the input arguments include `--vault <name>`. If found, extract the vault name and remove it from the arguments before parsing `--mode`.
**Step 2 — Resolve vault path:**
1. **If `--vault <name>` was provided:**
Read the vault registry at `<base_dir>/../../vaults.json`. Find the entry matching the name.
If not found: error — "Vault `<name>` is not registered. Run `/bedrock:vaults` to see available vaults."
If found: set `VAULT_PATH` to the entry's `path` value. Store the resolved vault name as `VAULT_NAME`.
2. **If no `--vault` flag — CWD detection:**
Read `<base_dir>/../../vaults.json`. Check if the current working directory is inside any registered vault path
(CWD starts with a registered vault's absolute path). If multiple match, use the longest path (most specific).
If found: set `VAULT_PATH` to the matching vault's `path`. Store its name as `VAULT_NAME`.
3. **If CWD detection fails — default vault:**
From the registry, find the vault with `"default": true`.
If found: set `VAULT_PATH` to the default vault's `path`. Store its name as `VAULT_NAME`.
4. **If no resolution:**
Error — "No vault resolved. Available vaults:" followed by the registry listing.
"Use `--vault <name>` to specify, or run `/bedrock:setup` to register a vault."
**Step 3 — Validate vault path:**
```bash
test -d "<VAULT_PATH>" && echo "exists" || echo "missing"
```
If missing: error — "Vault path `<VAULT_PATH>` does not exist on disk. Run `/bedrock:setup` to re-register."
**Step 4 — Read vault config:**
```bash
cat <VAULT_PATH>/.bedrock/config.json 2>/dev/null
```
Extract `language`, `git.strategy`, and other relevant fields for use in later phases.
**From this point forward, ALL vault file operations use `<VAULT_PATH>` as the root.**
- Entity directories: `<VAULT_PATH>/actors/`, `<VAULT_PATH>/people/`, etc.
- Git operations: `git -C <VAULT_PATH> <command>`
- When delegating to `/bedrock:preserve`, pass `--vault <VAULT_NAME>`
---
## Overview
This skill scans all entities in the vault, detects 5 types of structural misalignments,
proposes fixes to the user, and delegates all writes to `/bedrock:preserve`.
**You are an execution agent.** Follow the phases below in order, without skipping steps.
### Execution modes
The skill accepts an optional `--mode` argument:
- **`interactive`** (default): all 5 capabilities prompt the user for confirmation before execution.
- **`cron`**: capabilities 1 and 4 (mechanical, deterministic) execute autonomously without confirmation.
Capabilities 2, 3, and 5 (semantic, judgment-dependent) are detected but written as a proposal to a
fleeting note for human review — they are NOT executed.
Parse the mode from the invocation arguments. If no `--mode` is specified, default to `interactive`.
### Five alignment capabilities
| # | Capability | Type | Cron behavior |
|---|---|---|---|
| 1 | Broken backlinks | Mechanical | Autonomous — fix without confirmation |
| 2 | Concept match | Semantic | Queued — write proposal to fleeting note |
| 3 | Entity misalignment | Semantic | Queued — write proposal to fleeting note |
| 4 | Duplicated entities | Mechanical | Autonomous — fix without confirmation |
| 5 | Misnamed entities | Semantic | Queued — write proposal to fleeting note |
**Critical rules:**
- **NEVER** write entity files directly — all mutations go through `/bedrock:preserve`
- **NEVER** execute semantic capabilities (2, 3, 5) without confirmation in interactive mode
- **NEVER** execute semantic capabilities (2, 3, 5) autonomously in cron mode — always queue
- **NEVER** remove existing wikilinks
- **NEVER** delete entities (compress aligns, it does not delete)
- People/Teams/Concepts/Topics: **append-only** — never delete content
- Actors: **free merge** — may edit body freely
---
## Phase 0 — Sync the Vault
Execute:
```bash
git -C <VAULT_PATH> pull --rebase origin main
```
If it fails:
- No remote: warn "No remote configured. Working locally." and proceed.
- Conflict: `git -C <VAULT_PATH> rebase --abort` and warn the user. Do NOT proceed without resolving.
---
## Phase 1 — Scan and Detect
Scan the entire vault and run all 5 detection algorithms. Store results for Phase 2.
### 1.0 Load entity definitions
Read the entity definitions from the plugin directory to understand classification criteria:
- `<base_dir>/../../entities/concept.md` — needed for capability 2 (concept match)
- `<base_dir>/../../entities/*.md` — needed for capability 3 (entity misalignment)
Store the "When to create", "When NOT to create", and "How to distinguish" sections
from each entity definition for use in detection.
### 1.1 Read all entities
For each entity directory (`<VAULT_PATH>/actors/`, `<VAULT_PATH>/people/`, `<VAULT_PATH>/teams/`, `<VAULT_PATH>/concepts/`, `<VAULT_PATH>/topics/`, `<VAULT_PATH>/discussions/`, `<VAULT_PATH>/projects/`, `<VAULT_PATH>/fleeting/`):
1. List all `.md` files, **excluding `_template.md` and `_template_node.md`**
- For actors: include both `<VAULT_PATH>/actors/*.md` (flat) and `<VAULT_PATH>/actors/*/*.md` (folder)
2. For each entity, read frontmatter + body
3. Extract:
- `type` from frontmatter
- `name` from frontmatter (or filename as fallback)
- `aliases` from frontmatter (array)
- All wikilinks `[[target]]` from body AND frontmatter arrays
- All proper nouns, service names, team names, person names mentioned in the body (for capabilities 4 and 5)
**Optimization for large vaults:** If the vault has more than 100 entities in a type,
use subagents via Agent tool to parallelize reading by entity type.
**Output:** `vault_data` map: `entity_name → {type, name, aliases[], wikilinks[], body_mentions[], frontmatter, body}`
### 1.2 Capability 1 — Detect broken backlinks
For each entity A in `vault_data`:
1. For each wikilink `[[B]]` found in A (body or frontmatter arrays):
- Skip if B does not exist as an entity file in the vault (wikilinks to non-existent entities are valid in Obsidian)
- If B exists: check if B contains a wikilink `[[A]]` (body or frontmatter arrays)
- If B does NOT link back to A: register as **broken backlink**
**Output:** `broken_backlinks[]` — list of `{source: A, target: B, direction: "A→B exists, B→A missing"}`
### 1.3 Capability 2 — Detect concept fragmentation
Scan all entity bodies for recurring terms or phrases that:
1. Appear in **3+ different entities** (across any types)
2. Do NOT have a corresponding entity file in `<VAULT_PATH>/concepts/` (or any other entity directory)
3. Are NOT already wrapped in a wikilink `[[term]]`
For each candidate term, evaluate against the concept entity definition (`entities/concept.md`):
- Is it **timeless and definitional**? (not temporal, not an initiative)
- Is it **actor-independent**? (not specific to one system's implementation)
- Does it match "When to create" criteria?
- Does it NOT match "When NOT to create" criteria?
Filter out:
- Common English words and generic terms
- Terms that are already entity filenames or aliases
- Terms shorter than 2 words (unless they are well-known patterns like "CQRS", "mTLS")
**Output:** `concept_candidates[]` — list of `{term, occurrences: [{entity, context_snippet}], meets_concept_criteria: bool}`
### 1.4 Capability 3 — Detect entity misalignment
For each entity in `vault_data`:
1. Read the entity's frontmatter `type` field
2. Read the corresponding entity definition from `entities/<type>.md`
3. Evaluate the entity's content against:
- "When to create" criteria for the current type → does the entity still qualify?
- "When NOT to create" criteria for the current type → does the entity violate any?
- "How to distinguish" table → does the entity look like another type?
4. If a different type is a better fit:
- Score the entity against "When to create" criteria of the proposed new type
- Score the entity against "When NOT to create" criteria of the proposed new type
- If the new type scores higher: flag as **misaligned**
Focus on these common misalignments:
- Fleeting notes that have matured into topics, actors, or concepts (critical mass, corroboration)
- Topics that are actually concepts (timeless definition vs. temporal initiative)
- Actors that are actually projects (no repo/deployment yet)
**Output:** `misaligned_entities[]` — list of `{entity, current_type, proposed_type, reason}`
### 1.5 Capability 4 — Detect duplicated entities
Scan all entity bodies for proper nouns, service names, team names, and person names that:
1. Are mentioned in **3+ different entity files**
2. Do NOT have a corresponding entity file anywhere in the vault
3. Are NOT already wrapped in a wikilink `[[name]]`
Identification heuristics:
- Capitalized multi-word phrases (e.g., "Payment Gateway", "Alice Smith")
- Kebab-case or camelCase terms that look like service names (e.g., "billing-api", "notificationService")
- Terms following patterns like "the X team", "the X service", "X squad"
Filter out:
- Terms that are already entity filenames or aliases (existing entities)
- Generic organizational terms ("the team", "the service", "the API")
- Terms that appear only within wikilinks (already linked)
**Output:** `missing_entities[]` — list of `{name, inferred_type, mentions: [{entity, context_snippet}]}`
### 1.6 Capability 5 — Detect misnamed entities
Scan for name variants of the same real-world entity:
1. For each entity, collect all known names: filename (kebab-case), `name` field, `aliases[]`
2. For each proper noun/service name found in body text across the vault:
- Check if it is a variant of an existing entity name (case-insensitive, with/without hyphens, abbreviated forms)
- Example matches: "Iury" ↔ "Iury Krieger", "billing-api" ↔ "BillingAPI" ↔ "Billing API"
3. If a mention is a variant of an existing entity but NOT wrapped in a wikilink AND
the variant is NOT in the entity's `aliases[]`: flag as **misnamed**
4. If two distinct entity files refer to the same real-world entity (e.g., `iury.md` and `iury-krieger.md`):
flag as **duplicate entity files** requiring merge
**Output:** `misnamed_entities[]` — list of `{canonical_entity, variant_name, found_in: [{entity, context_snippet}], action: "add_alias" | "merge_entities"}`
---
## Phase 2 — Build Proposal
Present all findings to the user in a structured report, grouped by capability.
### 2.1 Summary table
```markdown
## /bedrock:compress — Alignment Proposal
| # | Capability | Findings | Mode |
|---|---|---|---|
| 1 | Broken backlinks | N found | Autonomous / Interactive |
| 2 | Concept match | N candidates | Queued / Interactive |
| 3 | Entity misalignment | N misaligned | Queued / Interactive |
| 4 | Duplicated entities | N missing | Autonomous / Interactive |
| 5 | Misnamed entities | N variants | Queued / Interactive |
**Total findings:** N
**Mode:** interactive / cron
```
### 2.2 Capability 1 — Broken backlinks
```markdown
### Capability 1: Broken Backlinks
| # | Source | Target | Missing direction |
|---|---|---|---|
| 1 | [[entity-a]] | [[entity-b]] | entity-b → entity-a |
| 2 | [[entity-c]] | [[entity-d]] | entity-d → entity-c |
**Fix:** Add missing backlinks in target entities via /bedrock:preserve.
```
If no broken backlinks found: "No broken backlinks found."
### 2.3 Capability 2 — Concept match
```markdown
### Capability 2: Concept Fragmentation
| # | Candidate concept | Occurrences | Entities |
|---|---|---|---|
| 1 | "event sourcing" | 5 | [[actor-a]], [[topic-b]], [[actor-c]], ... |
| 2 | "circuit breaker" | 3 | [[actor-d]], [[actor-e]], [[topic-f]] |
**Fix:** Create concept entities and add wikilinks in referencing entities via /bedrock:preserve.
```
If no candidates found: "No concept fragmentation found."
### 2.4 Capability 3 — Entity misalignment
```markdown
### Capability 3: Entity Misalignment
| # | Entity | Current type | Proposed type | Reason |
|---|---|---|---|---|
| 1 | [[note-about-cqrs]] | fleeting | concept | Meets critical mass: >3 paragraphs, timeless definition |
| 2 | [[new-checkout-system]] | actor | project | No repo or deployment yet |
**Fix:** Recategorize via /bedrock:preserve (create under new type, mark original as promoted/consolidated).
```
If no misalignments found: "No entity misalignments found."
### 2.5 Capability 4 — Duplicated entities
```markdown
### Capability 4: Missing Entities (Mentioned but Not Created)
| # | Name | Inferred type | Mentions |
|---|---|---|---|
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