tcga-gene-expression

name	tcga-gene-expression
description	Retrieve gene expression data from TCGA (The Cancer Genome Atlas) to analyze cancer-specific expression patterns.
license	MIT license
metadata	{"skill-author":"PJLab"}

TCGA Gene Expression Analysis

Usage

import asyncio
import json
from mcp.client.streamable_http import streamablehttp_client
from mcp import ClientSession

class OrigeneClient:
    def __init__(self, server_url: str, api_key: str):
        self.server_url = server_url
        self.api_key = api_key
        self.session = None

    async def connect(self):
        try:
            .transport = streamablehttp_client(url=.server_url, headers={: .api_key})
            .read, .write, .get_session_id =  .transport.__aenter__()
            .session_ctx = ClientSession(.read, .write)
            .session =  .session_ctx.__aenter__()
             .session.initialize()
             
         Exception  e:
             

      ():
         .session:
             .session_ctx.__aexit__(, , )
         (, ):
             .transport.__aexit__(, , )

     ():
         (result, ):
            content_list = result.get()  []
        :
            content_list = (result, , [])  []
        texts = []
         item  content_list:
             (item, ):
                 item.get() == :
                    texts.append(item.get()  )
            :
                 (item, , ) == :
                    texts.append((item, , )  )
         .join(texts)


client = OrigeneClient(, )
 client.connect()

result =  client.session.call_tool(, arguments={: })
(client.parse_result(result))

 client.disconnect()