kyre-99

Ingest sources into the wiki using external LLM extraction (faster batch processing). Fully automated - fetches, extracts, and writes wiki pages in one command.

Initialize the Everything is Knowledge wiki. Creates directories, configures API keys, and sets up PDF parsing options. Run once to set up a new wiki.

Disambiguate entities and manage aliases for the knowledge wiki

Search and ingest academic papers from arXiv/PMC into the wiki. Supports keyword search, trending papers, and direct arXiv ID lookup.

Check wiki health and suggest fixes

Query the knowledge wiki and get synthesized answers

Implement a persisted research plan in code and maintain a Ralph-like task list plus progress log for implementation. Use when the user already has a research direction and wants runnable code, experiment scaffolding, baselines, evaluation scripts, or a first…

Prepare and maintain a persistent Ralph-like optimization run for research code using prd.json, progress.md, and CLAUDE.md. Use when the user wants repeated implement-evaluate-improve cycles with a clear optimization target and resumable state. Triggers on:…

Set up or repair only the minimal persistent file and runner structure that lets planning, implementation, and optimization survive context resets or interrupted sessions. Use when the user wants Ralph-like persistence, resumable execution, state files,…

Orchestrate the persisted research workflow by reading and updating the project's planning, implementation, optimization, and runtime artifacts. Use when the user wants the whole research bot workflow to continue from the current state instead of starting…

Discuss a research problem with the user, clarify the scope, and persist the outcome as a durable research plan plus a planning history log. Use when the user wants to shape an idea, refine a research question, compare directions, define milestones, or…