enterobase-api

name	enterobase-api
description	Enterobase-API API skill. Use when working with Enterobase-API for api. Covers 30 endpoints.
version	1.0.0
generator	lapsh

Enterobase-API

API version: v2.0

Auth

basic

Base URL

Not specified.

Setup

1. Configure auth: basic
2. GET /api/v2.0 -- verify access
3. POST /api/v2.0/lookup/{barcode} -- create first lookup

Endpoints

30 endpoints across 1 groups. See references/api-spec.lap for full details.

api

Method	Path	Description
GET	/api/v2.0	Top level information about EnteroBase databases
GET	/api/v2.0/login	Login endpoint, refresh your API token
GET	/api/v2.0/lookup	Generic endpoint for lookup list of barcodes
GET	/api/v2.0/lookup/{barcode}	Generic endpoint for lookup of barcodes
POST	/api/v2.0/lookup/{barcode}	Generic endpoint for lookup of barcodes
GET	/api/v2.0/{database}/AMRdata	AMR data
GET	/api/v2.0/{database}/AMRdata/{barcode}	AMR data
POST	/api/v2.0/{database}/AMRdata/{barcode}	AMR data
PUT	/api/v2.0/{database}/AMRdata/{barcode}	AMR data
GET	/api/v2.0/{database}/assemblies	Genome assemblies
GET	/api/v2.0/{database}/assemblies/{barcode}	Genome assemblies
POST	/api/v2.0/{database}/assemblies/{barcode}	Genome assemblies
PUT	/api/v2.0/{database}/assemblies/{barcode}	Genome assemblies
GET	/api/v2.0/{database}/schemes	Genotyping schemes
GET	/api/v2.0/{database}/schemes/{barcode}	Genotyping schemes
POST	/api/v2.0/{database}/schemes/{barcode}	Genotyping schemes
PUT	/api/v2.0/{database}/schemes/{barcode}	Genotyping schemes
GET	/api/v2.0/{database}/straindata	Strain data
GET	/api/v2.0/{database}/strains	Strain metadata
GET	/api/v2.0/{database}/strains/{barcode}	Strain metadata
POST	/api/v2.0/{database}/strains/{barcode}	Strain metadata
PUT	/api/v2.0/{database}/strains/{barcode}	Strain metadata
GET	/api/v2.0/{database}/strainsversion	Strain previous metadata
GET	/api/v2.0/{database}/traces	Traces (sequence-reads) metadata
GET	/api/v2.0/{database}/traces/{barcode}	Traces (sequence-reads) metadata
POST	/api/v2.0/{database}/traces/{barcode}	Traces (sequence-reads) metadata
PUT	/api/v2.0/{database}/traces/{barcode}	Traces (sequence-reads) metadata
GET	/api/v2.0/{database}/{scheme}/alleles	Alleles data
GET	/api/v2.0/{database}/{scheme}/loci	Loci
GET	/api/v2.0/{database}/{scheme}/sts	ST profile data

Common Questions

Match user requests to endpoints in references/api-spec.lap. Key patterns:

• "List all v2.0?" -> GET /api/v2.0
• "List all login?" -> GET /api/v2.0/login
• "List all lookup?" -> GET /api/v2.0/lookup
• "Get lookup details?" -> GET /api/v2.0/lookup/{barcode}
• "List all AMRdata?" -> GET /api/v2.0/{database}/AMRdata
• "Get AMRdata details?" -> GET /api/v2.0/{database}/AMRdata/{barcode}
• "Update a AMRdata?" -> PUT /api/v2.0/{database}/AMRdata/{barcode}
• "List all assemblies?" -> GET /api/v2.0/{database}/assemblies
• "Get assembly details?" -> GET /api/v2.0/{database}/assemblies/{barcode}
• "Update a assembly?" -> PUT /api/v2.0/{database}/assemblies/{barcode}
• "List all schemes?" -> GET /api/v2.0/{database}/schemes
• "Get scheme details?" -> GET /api/v2.0/{database}/schemes/{barcode}
• "Update a scheme?" -> PUT /api/v2.0/{database}/schemes/{barcode}
• "List all straindata?" -> GET /api/v2.0/{database}/straindata
• "List all strains?" -> GET /api/v2.0/{database}/strains
• "Get strain details?" -> GET /api/v2.0/{database}/strains/{barcode}
• "Update a strain?" -> PUT /api/v2.0/{database}/strains/{barcode}
• "List all strainsversion?" -> GET /api/v2.0/{database}/strainsversion
• "List all traces?" -> GET /api/v2.0/{database}/traces
• "Get trace details?" -> GET /api/v2.0/{database}/traces/{barcode}
• "Update a trace?" -> PUT /api/v2.0/{database}/traces/{barcode}
• "List all alleles?" -> GET /api/v2.0/{database}/{scheme}/alleles
• "List all loci?" -> GET /api/v2.0/{database}/{scheme}/loci
• "List all sts?" -> GET /api/v2.0/{database}/{scheme}/sts
• "How to authenticate?" -> See Auth section

Response Tips

• Check response schemas in references/api-spec.lap for field details
• List endpoints may support pagination; check for limit, offset, or cursor params
• Create/update endpoints typically return the created/updated object

References

• Full spec: See references/api-spec.lap for complete endpoint details, parameter tables, and response schemas

Generated from the official API spec by LAP