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Genome assembly quality assessment: N50/N90/L50/L90 (QUAST-compatible), GC content, contig length distribution, completeness estimation. Wraps SPAdes, Megahit, Flye, Canu.
默认使用会先检查来源的 Prompt；你也可以切换为直接命令，或下载本地副本。
决定是否安装前，请先阅读 SKILL.md，以及 SkillsMP 当前展示的配套文件。
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
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npx skills add https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- --skill genomics-assembly命令会保持在同一行。复制前请横向滚动并检查完整内容。
想先保存到本地？可下载 SkillsMP 当前能够提供的文件。
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| name | genomics-assembly |
| description | Genome assembly quality assessment: N50/N90/L50/L90 (QUAST-compatible), GC content, contig length distribution, completeness estimation. Wraps SPAdes, Megahit, Flye, Canu. |
| version | 0.2.0 |
| author | OmicsClaw |
| license | MIT |
| tags | ["genomics","assembly","SPAdes","Flye","Canu"] |
| metadata | {"omicsclaw":{"domain":"genomics","emoji":"🧬","trigger_keywords":["genome assembly","de novo","SPAdes","Megahit","Flye","Canu"],"allowed_extra_flags":["--method"],"legacy_aliases":["assemble"],"saves_h5ad":false}} |
De novo genome assembly for short and long reads. Wraps SPAdes, Megahit, Flye, and Canu.
python omicsclaw.py run genomics-assembly --demo
python omicsclaw.py run genomics-assembly --input <reads.fastq> --output <>
output_directory/
├── report.md
├── result.json
├── assembled.fa
├── figures/
│ └── assembly_graph.png
├── tables/
│ └── quast_metrics.csv
└── reproducibility/
├── commands.sh
├── requirements.txt
└── checksums.sha256
Trigger conditions:
Chaining partners:
genomics-qc — Upstream read trimmingannotation — Downstream genome annotation