mage-antibody-generator

name	mage-antibody-generator
description	Ab seq forge
keywords	["antibody","antigen","FASTA","generation","validation"]
measurable_outcome	Generate the requested number of antibody sequences (default ≥5) with metadata (model checkpoint, seed) and deliver FASTA files within 10 minutes.
license	MIT
metadata	{"author":"MAGE Team","version":"1.0.0"}
compatibility	[{"system":"Python 3.9+ / GPU"}]
allowed-tools	["run_shell_command","read_file"]

MAGE (Monoclonal Antibody Generator)

Run the MAGE antibody generation workflow to propose antigen-conditioned antibody sequences for downstream structural validation.

Workflow

1. Prep env: cd repo and install dependencies, then point to GPU if available.
2. Run generator: python generate_antibodies.py --antigen_sequence <SEQ> --num_candidates N --output_dir ./results.
3. Collect outputs: Provide FASTA paths + metadata, optionally translate into JSON manifest.
4. Recommend validation: Suggest AlphaFold/Rosetta checks and wet-lab follow-up.

Guardrails

• Never imply binding efficacy without structural/experimental confirmation.
• Track model version + seeds to ensure reproducibility.
• Encourage downstream filtering (liability motifs, developability metrics).

References

• Source instructions in README.md and repo scripts.