用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
直接命令不会经过审查 Prompt；运行前请先检查来源。
npx skills add https://github.com/tomevault-io/skills-registry --skill setup命令会保持在同一行。复制前请横向滚动并检查完整内容。
想先保存到本地？可下载 SkillsMP 当前能够提供的文件。
| Use when this capability is needed.
> Use when this capability is needed.
Review architecture and API design for the vfs-s3 project. Use when the user mentions @architect, asks to review an issue's design, discuss module boundaries, API shape, or architectural decisions for vfs-s3. Also trigger when the user wants to create an ADR (Architecture Decision Record) or evaluate a technical approach for the project. Intended for dispatch from Codex automation or Claude routines; GitHub trigger phrase: @vfs-s3-bot please prepare design doc Use when this capability is needed.
基于 SOC 职业分类
正在显示 SKILL.md
| name | setup |
| description | > Use when this capability is needed. |
Help users get their environment ready to run protein design tools.
Run through this checklist when a user encounters setup issues:
| Step | Check | Fix |
|---|---|---|
| 1. Modal CLI | modal --version | pip install modal |
| 2. Modal auth | modal token show | modal setup |
| 3. biomodals | ls biomodals/modal_*.py | git clone https://github.com/hgbrian/biomodals |
| 4. Test | cd biomodals && modal run modal_boltzgen.py --help | See troubleshooting |
Cause: Modal CLI not installed.
Fix:
pip install modal
Then restart the terminal or run hash -r.
Cause: Modal not authenticated.
Fix:
modal setup
This opens a browser. Click "Authorize" to complete authentication.
Cause: biomodals repository not cloned or not in correct directory.
Fix:
git clone https://github.com/hgbrian/biomodals
cd biomodals
Cause: uvx is an optional wrapper from the uv package. It's not required.
Fix: Run modal directly (recommended):
modal run modal_boltzgen.py --help
Or install uv if you prefer using uvx:
pip install uv
pip install modal
Verify: modal --version
modal setup
This opens a browser. Click "Authorize".
Verify: modal token show
git clone https://github.com/hgbrian/biomodals
cd biomodals
Verify: ls modal_*.py should show files like modal_boltzgen.py
cd biomodals
modal run modal_boltzgen.py --help
Expected: Usage instructions appear showing --input-yaml, --protocol, --num-designs options.
Once setup is complete, users can:
cd biomodals
# Design binders with BoltzGen (requires YAML config)
modal run modal_boltzgen.py --input-yaml binder.yaml --protocol protein-anything --num-designs 50
# Generate backbones with RFdiffusion
modal run modal_rfdiffusion.py --pdb target.pdb --contigs "A1-150/0 70-100" --num-designs 100
# Validate with Chai
modal run modal_chai1.py --input-faa designs.fasta
Set GPU with environment variable:
GPU=A10G modal run modal_rfdiffusion.py --pdb target.pdb --contigs "A1-100/0 50-80" --num-designs 10
GPU=L40S modal run modal_boltzgen.py --input-yaml config.yaml --num-designs 50
GPU=A100 modal run modal_chai1.py --input-faa complex.fasta
| GPU | VRAM | Best For |
|---|---|---|
| T4 | 16GB | ProteinMPNN, ESM |
| A10G | 24GB | RFdiffusion, Chai |
| L40S | 48GB | BoltzGen, BindCraft |
| A100 | 40-80GB | Large complexes |
Modal offers $30/month in free credits - enough for:
Full documentation: See Installation Guide
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