菜单
Use when reading or debugging the shared `xcommon.sh` shell library that supplies local-archive discovery, stdin parsing, and common helper functions to EDirect `x*` scripts.
默认使用会先检查来源的 Prompt；你也可以切换为直接命令，或下载本地副本。
决定是否安装前，请先阅读 SKILL.md，以及 SkillsMP 当前展示的配套文件。
用 Codex 或 Claude 帮你安装 复制这段 Prompt，粘贴到 Codex、Claude 或其他助手里，让它检查 Skill 页面并帮你完成安装。
直接命令不会经过审查 Prompt；运行前请先检查来源。
npx skills add https://github.com/vimalinx/bio-agent --skill xcommon-sh命令会保持在同一行。复制前请横向滚动并检查完整内容。
想先保存到本地？可下载 SkillsMP 当前能够提供的文件。
Use when joint-genotyping one or more germline gVCFs into a cohort VCF with GATK GenotypeGVCFs.
Use when running GATK HaplotypeCaller to emit per-sample germline variant calls or gVCFs from analysis-ready BAM/CRAM inputs.
Use when splitting mixed accession-like text into one lowercase token per line in EDirect-style text pipelines.
基于 SOC 职业分类
正在显示 SKILL.md
| name | xcommon-sh |
| description | Use when reading or debugging the shared `xcommon.sh` shell library that supplies local-archive discovery, stdin parsing, and common helper functions to EDirect `x*` scripts. |
| disable-model-invocation | true |
| user-invocable | true |
Shared shell library for the newer local-archive x* EDirect scripts. It is not a meaningful standalone CLI; it defines common variables and functions such as ParseStdin, GetUIDs, FindArchiveFolder, FindPostingsFolder, FindDataFolder, DisplayError, and date-constraint normalization.
/home/vimalinx/miniforge3/envs/bio/bin/xcommon.shxfetch, xfilter, and xinfoxfetch, xfilter, or xinfo behave the way they doEDIRECT_LOCAL_ARCHIVEx* helpersEDIRECT_TRACE behavior# Read the shared helper source
sed -n '1,260p' /home/vimalinx/miniforge3/envs/bio/bin/xcommon.sh
# Grep the library for folder-discovery helpers
rg 'FindArchiveFolder|FindPostingsFolder|FindDataFolder' /home/vimalinx/miniforge3/envs/bio/bin/xcommon.sh
# Source it inside a debugging shell if needed
. /home/vimalinx/miniforge3/envs/bio/bin/xcommon.sh
xcommon.sh as shared implementation, not as an end-user command.x* wrapper emits path or stdin-source errors that seem opaque.FindLocalArchiveFolder, GetUIDs, ParseStdin, and the display helpers.EDIRECT_TRACE=true before running the higher-level wrapper that sources this file.xcommon.sh -h and xcommon.sh --version produced no useful output in local testing.rchive -local <db> <Archive|Postings|Data|Source>.EDIRECT_LOCAL_ARCHIVE cannot be resolved, the shared helper emits ERROR: Must supply path to local data by setting EDIRECT_LOCAL_ARCHIVE environment variable and exits.GetUIDs normalizes IDs by splitting on non-alphanumeric/underscore/dot characters and sorting/uniquing the final stream.