experiments

name	experiments
description	Plan, revise, execute, and report Synapse experiments, including compute access and result submission.
license	AGPL-3.0
metadata	{"author":"Vincentwei1021","version":"0.6.1","category":"research","mcp_server":"synapse"}

Experiments Skill

Use this skill for the experiment stage: drafting plans, revising returned experiments, running approved work, using compute, and submitting results.

Prompt Boundary

Stay inside this skill when the work is about:

• creating a brand-new experiment from scratch
• draft, pending_review, pending_start, in_progress, or completed experiments
• plan authoring or revision based on reviewer feedback
• reserving GPUs and starting workloads
• reporting progress and saving results
• writing experiment result reports

Hand off to:

• research for literature and deep research
• documents for Markdown report figures, chart blocks, and Synapse-hosted image uploads
• autonomy to drive the CC-client autonomous loop when there is nothing to execute and you need to propose the next experiment
• sessions when running multiple experiments in parallel via sub-agents

Empty-Assignment Onboarding

If synapse_get_assigned_experiments returns empty, do not idle. Ask the user which path:

1. Execute an approved experiment — list pending_start experiments in the project with synapse_get_project_full_context and ask which to start.
2. Flesh out a quick idea — call synapse_get_project_full_context, then draft a plan with synapse_create_experiment (defaults to draft; run a self-review sub-agent before pushing to pending_review per the "Create → Self-Review → Pending Review → Verbal Approve" section below).
3. Create the foundational experiment — if the project has no completed experiments, offer the foundational template below.
4. Enter the autonomous loop — hand off to autonomy to propose and auto-dispatch the next experiment.

Create → Self-Review → Pending Review → Verbal Approve

Every agent-created experiment goes through this sequence before reaching pending_review.

1. synapse_create_experiment(...) — defaults to draft. The PostToolUse hook will remind you to run self-review next.
2. Spawn a self-review sub-agent with the Task tool. Use a prompt similar to:

   Self-review experiment <experimentUuid> for project <projectUuid>.
   Call synapse_get_experiment to read the plan. Then evaluate against the project's evaluationMethods:
   - Is the objective specific and measurable?
   - Is the methodology sound and reproducible?
   - Do the success criteria align with the project's evaluation methods?
   - Is the compute budget realistic given current availability (synapse_list_compute_nodes)?
   Return a short verdict: "pass" or a bulleted list of concrete revisions.
   Do NOT write back to Synapse — your verdict is consumed in-session by the main agent.
   

3. If the verdict surfaces issues, apply revisions with synapse_update_experiment_plan({ experimentUuid, ... }).
4. synapse_update_experiment_status({ experimentUuid, status: "pending_review" }) to push the draft into review.
5. Present the self-review summary and the plan summary to the user in the terminal. Wait for a verbal answer.
6. On verbal approve:

   synapse_review_experiment({
     experimentUuid,
     decision: "approved",
     reviewNote: 'User verbally approved in terminal: "<exact words>"',
   })
   

   That call atomically transitions to pending_start, writes the activity, and emits task_assigned so execution can begin.
7. On verbal reject: summarize the user's revision request in second-person Chinese, including a quoted phrase from the user, and pass it as reviewNote:

   synapse_review_experiment({
     experimentUuid,
     decision: "rejected",
     reviewNote: '用户口头要求修改：…（原话："…"）',
   })
   

   The review tool writes the comment and emits experiment_revision_requested automatically — do not also call synapse_add_comment.
8. After a reject, the experiment is back in draft. Revise per feedback, run self-review again, then resubmit to pending_review.
9. Full-auto mode (set verbally via the autonomy skill, lives only in the current CC session): after step 4, skip steps 5–8 and immediately call synapse_review_experiment with the fixed full-auto template:

   reviewNote: 'Full-auto session authorized by <ownerName> at <ISO time>. Self-review pass: <key points>.'
   

   If self-review timed out or errored: 'Self-review skipped: <reason>.'. Full-auto never pauses on advisory self-review output — it only exits on user-stop or hard external errors.

The synapse_review_experiment tool requires admin or pi_agent role. To run verbal-approve flows on Claude Code, configure the CC agent with one of those roles.

Foundational First Experiment

If the project has no completed experiments yet, the first experiment is not a normal research run — it is the project's baseline infrastructure. Drive it through three bundled deliverables before any comparison work:

1. Data preparation — normalize the raw dataset into a single canonical format every future experiment will consume. Keep the prep scripts under the project's repo (if one is configured via synapse_get_repo_access).
2. Baseline run — execute the simplest reasonable approach end-to-end and record its metrics with synapse_submit_experiment_results, so subsequent experiments have something to beat.
3. Evaluation script — implement the canonical eval harness future experiments will call. Commit alongside data prep.

If the project has a repo, commit all three onto the base branch (or a per-experiment branch merged back). Every subsequent experiment branches from that base so it inherits prep + eval automatically.

Typical Flow

1. synapse_checkin() — refresh identity and assignments
2. Author or fetch the experiment
   • New plan: synapse_create_experiment(...) (defaults to draft; run a self-review sub-agent and revise before pushing to pending_review per the section below)
   • Existing assignment: synapse_get_assigned_experiments() then synapse_get_experiment({ experimentUuid })
3. If drafting or revising: synapse_update_experiment_status({ status: "draft", liveStatus: "writing" }) + synapse_update_experiment_plan(...), then synapse_update_experiment_status({ status: "pending_review" })
4. Before execution: synapse_search_incident_lessons({ researchProjectUuid, query? }) for relevant prior failures/recoveries, then synapse_list_compute_nodes({ onlyAvailable: true, researchProjectUuid })
5. Reserve compute: optional synapse_reserve_gpus(...) or inline via synapse_start_experiment({ gpuUuids })
6. synapse_start_experiment({ experimentUuid, sessionUuid?, workingNotes }) — moves to in_progress; sub-agents should pass the auto-injected sessionUuid
7. If remote compute: synapse_get_node_access_bundle({ experimentUuid, nodeUuid }), write the returned privateKeyPemBase64 to a local PEM, chmod 600, SSH with the returned host/user/port
8. If repo-backed: synapse_get_repo_access → clone → branch from the experiment's base branch (commit + push back to this repo at the end is mandatory)
9. Run the workload in a persistent remote shell (tmux/screen) with unbuffered output (python -u … or PYTHONUNBUFFERED=1) so logs never stall a tool call
10. Report progress with synapse_report_experiment_progress at milestones — phase ∈ setup | training | evaluation | analysis; liveStatus ∈ checking_resources | queuing | running
11. If you hit a reusable execution issue and recover, call synapse_record_experiment_incident_lesson({ status: "resolved_in_run", ... }) after the fix. Use progress logs for the live narrative; use incident lessons for root cause, resolution, and prevention.
12. For long runs (>30 min), the main agent must schedule its own monitor heartbeat with CronCreate so the experiment card never looks dead. See "Monitoring Long Runs With CronCreate" below for the exact pattern.
13. Commit code/artifacts to the experiment branch or base branch; capture the commit SHA
14. Finish with synapse_submit_experiment_results({ experimentUuid, sessionUuid?, outcome, experimentResults, experimentBranch, commitSha }) — outcome ∈ success | failure | inconclusive; sub-agents should pass sessionUuid so Synapse checks the session out
15. If the final outcome is failure or inconclusive, call synapse_record_experiment_incident_lesson({ status: "caused_failure" | "unresolved", ... }) unless there is truly no reusable lesson; in that case state that explicitly in the report.
16. Always follow synapse_submit_experiment_results with synapse_save_experiment_report({ experimentUuid, title, content }) — write a full markdown writeup (objective, methodology, results, analysis, charts where relevant). For generated plots, use documents and upload each figure with synapse_upload_document_image({ experimentUuid, filename, mimeType, base64Content }) before embedding the returned /api/documents/.../images/... URL. Do not post the report as a comment, and do not treat this step as optional even for failure / inconclusive runs
17. If revising per reviewer feedback, read the full thread first with synapse_get_comments({ targetType: "experiment", targetUuid }) before editing the plan

Core Rules

• Never assume a server-local SSH key path exists. Always fetch the access bundle and write the PEM locally.
• One independent run per experiment card. Do not bundle comparison runs, ablations, or parameter sweeps into a single experiment — create multiple cards.
• Match the project description's language. If the project brief is in Chinese, write the plan, progress, and report in Chinese.
• If the project is repo-backed, you must commit back. Whenever synapse_get_repo_access returns a configured repo, all experiment code, configs, and meaningful artifacts must be committed and pushed to that repo (on the experiment branch or merged to base), and the resulting branch + commitSha must be passed to synapse_submit_experiment_results. Local-only runs without a commit are not acceptable when a repo exists.
• Always save an experiment report after submitting results. Every synapse_submit_experiment_results call must be immediately followed by synapse_save_experiment_report({ experimentUuid, title, content }) with a full markdown writeup. This applies to success, failure, and inconclusive outcomes alike.
• Split plan / execution / report tools. Use synapse_update_experiment_plan for plan edits, synapse_report_experiment_progress for live status, synapse_submit_experiment_results for completion, and synapse_save_experiment_report for the dedicated report. Do not substitute with comments.
• Progress logs are not lessons. Use synapse_report_experiment_progress for what is happening now. Use synapse_record_experiment_incident_lesson when the root cause / resolution / prevention would help a future agent.
• Revision stays durable. When a reviewer sends an experiment back, flip to draft, revise, then move it back to pending_review; leave a reply via synapse_add_comment using @[name](actorType:uuid) format to notify the reviewer.
• Failures are data. An experiment that crashes or shows a regression is still a valid submission: set outcome: "failure" (or "inconclusive"), write up what happened in experimentResults and the report, and record an incident lesson when there is reusable execution knowledge.

Monitoring Long Runs With CronCreate

For any experiment that you expect to run longer than ~30 minutes, the main agent must set up its own heartbeat with Claude Code's built-in CronCreate tool so the experiment card stays current and the user (or the autonomous loop) sees regress / completion as soon as it happens. Do not ask the user to run /loop and do not install a remote cron job — the main agent owns this.

When to schedule

Schedule the monitor immediately after synapse_start_experiment returns successfully, before you SSH into the node or hand off to the workload. That way the card is being touched even while the workload is still warming up.

The CronCreate call

CronCreate is a deferred Claude Code tool. If its schema is not loaded yet, run ToolSearch with select:CronCreate,CronDelete once before scheduling.

CronCreate({
  cron: "<every-N-minutes expression>",
  prompt: "Check Synapse experiment <experimentUuid>: read synapse_get_experiment, parse the latest tmux/log output on the remote node, and call synapse_report_experiment_progress with phase + liveStatus + a one-line message describing the latest metric. If the experiment has completed, call CronDelete on this job.",
  recurring: true,
  durable: true,
})

Capture the returned job id — you will need it for CronDelete when the experiment finishes.

Cadence

• Default: every 10 minutes (cron: "*/10 * * * *"). This matches the /loop default and is the right starting point for almost every experiment.
• Long experiments (expected to run >3 hours): tighten cadence over time. Start with 10 minutes for the first few heartbeats so users see early-failure signals quickly; once the experiment has reached a steady-state training phase, the main agent should CronDelete the 10-minute job and CronCreate a 30-minute job (cron: "*/30 * * * *" — or pick "7,37 * * * *" etc to avoid the :00 / :30 fleet-wide convoy).
• Avoid :00 and :30 exact minutes unless something else demands them. The CronCreate schema documents that the global Claude fleet stampedes those marks; pick odd offsets (*/10 is fine because of the natural distribution; 0 */1 * * * for hourly is not — use 7 */1 * * *).
• Never schedule below 5 minutes. Synapse's backend doesn't need that resolution and you'll burn through the 7-day recurring-task budget on noise.

Required: durable: true

Set durable: true always. Long experiments routinely outlive a single CC session (user closes laptop overnight, CC restarts, etc.). With durable: true, the cron job persists to .claude/scheduled_tasks.json and resumes automatically — missed fires are caught up after restart, so the card never goes stale just because CC was offline.

The recurring: true 7-day auto-expiry is fine: very few experiments run longer than a week. If one does, the heartbeat firing one last time and self-deleting is a safe failure mode.

What the heartbeat prompt does

When the cron fires, CC enqueues your prompt as a fresh user turn. The agent should:

1. synapse_get_experiment({ experimentUuid }) — read current state.
2. If status is completed (success / failure / inconclusive), call CronDelete({ id: <jobId> }) and exit. Do not keep heartbeating after completion.
3. Otherwise, SSH into the compute node (use the cached PEM, do not re-fetch the access bundle on every tick) and read the tail of the tmux log.
4. Compose a one-line synapse_report_experiment_progress update: latest metric, current phase, liveStatus: "running". If progress has stalled (same metric for 3+ heartbeats), surface that to the user.
5. If you change cadence (10 min → 30 min after warmup), do CronDelete(oldId) then CronCreate(...) with the new cadence and the new id.

Cleanup

After synapse_submit_experiment_results, the post-submit hook reminds you to call synapse_save_experiment_report. At the same time, call CronDelete({ id: <heartbeatJobId> }) to stop the heartbeat. Forgetting this is the easiest mistake — the experiment is completed but a stale heartbeat keeps re-checking it for up to 7 days. Track the job id in your todo list right after CronCreate so you don't lose it.

Why CronCreate, not /loop or remote cron

• /loop is the user-facing command that wraps CronCreate. The main agent should call CronCreate directly — never push the user to type /loop themselves.
• A remote cron job on the GPU node would work but adds operational overhead (SSH + cron edit + cleanup) and breaks if the node is reimaged. CC's scheduler is closer to the agent, knows when to fire (REPL-idle), and clears itself in 7 days.

Running Multiple Experiments In Parallel

When the user wants to execute several pending_start experiments at the same time, the main agent should monitor and dispatch rather than run workloads itself. Spawn one Task-tool sub-agent per experiment UUID — the plugin's SubagentStart hook auto-creates a Synapse session and injects the full execution workflow. To track progress without blocking on any one sub-agent, schedule a single CronCreate heartbeat that reads synapse_get_assigned_experiments({ statuses: ["in_progress", "completed"] }) and reports state changes — see "Monitoring Long Runs With CronCreate" above for the pattern. See sessions for the full sub-agent pattern.

Reference

• Experiment workflow reference
• Common tools
• Plugin hooks and parallel execution