geo-infer-bio

name	geo-infer-bio
description	Biodiversity analysis and ecological modeling. Use when analyzing species distributions, habitat connectivity, biodiversity indices, ecological networks, conservation planning, or ecosystem health assessment.
prerequisites	{"required":["geo-infer-space","geo-infer-data"],"recommended":["geo-infer-bayes"]}
difficulty	intermediate
estimated_time	45min
examples_dir	../GEO-INFER-EXAMPLES/examples/

GEO-INFER-BIO

Instructions

Core Capabilities

• Species distribution: Habitat suitability modeling, range mapping
• Biodiversity indices: Shannon, Simpson, species richness, evenness
• Habitat connectivity: Corridor analysis, fragmentation metrics
• Ecological networks: Food webs, mutualistic networks, trophic cascades
• Conservation planning: Priority area identification, gap analysis

Key Imports

from geo_infer_bio.core.biodiversity import BiodiversityAnalyzer
from geo_infer_bio.core.habitat import HabitatModel
from geo_infer_bio.core.connectivity import ConnectivityAnalyzer
from geo_infer_bio.core.ecosystem import EcosystemHealthAssessor

Examples

from geo_infer_bio.core.biodiversity import BiodiversityAnalyzer

analyzer = BiodiversityAnalyzer()
indices = analyzer.compute_indices(species_data)
print(f"Shannon: {indices.shannon}, Simpson: {indices.simpson}")

# Hotspot detection
hotspots = analyzer.detect_hotspots(species_grid, threshold=0.95)

Guidelines

Integrations

• Integrates with SPACE for H3-based habitat tessellation
• Integrates with CLIMATE for climate-driven species range shifts
• Integrates with FOREST for canopy-biodiversity correlations
• Test: uv run python -m pytest GEO-INFER-BIO/tests/ -v