| name | geo-infer-bio |
| description | Biodiversity analysis and ecological modeling. Use when analyzing species distributions, habitat connectivity, biodiversity indices, ecological networks, conservation planning, or ecosystem health assessment. |
| prerequisites | {"required":["geo-infer-space","geo-infer-data"],"recommended":["geo-infer-bayes"]} |
| difficulty | intermediate |
| estimated_time | 45min |
| examples_dir | ../GEO-INFER-EXAMPLES/examples/ |
GEO-INFER-BIO
Instructions
Core Capabilities
- Species distribution: Habitat suitability modeling, range mapping
- Biodiversity indices: Shannon, Simpson, species richness, evenness
- Habitat connectivity: Corridor analysis, fragmentation metrics
- Ecological networks: Food webs, mutualistic networks, trophic cascades
- Conservation planning: Priority area identification, gap analysis
Key Imports
from geo_infer_bio.core.biodiversity import BiodiversityAnalyzer
from geo_infer_bio.core.habitat import HabitatModel
from geo_infer_bio.core.connectivity import ConnectivityAnalyzer
from geo_infer_bio.core.ecosystem import EcosystemHealthAssessor
Examples
from geo_infer_bio.core.biodiversity import BiodiversityAnalyzer
analyzer = BiodiversityAnalyzer()
indices = analyzer.compute_indices(species_data)
print(f"Shannon: {indices.shannon}, Simpson: {indices.simpson}")
hotspots = analyzer.detect_hotspots(species_grid, threshold=0.95)
Guidelines
Integrations
- Integrates with SPACE for H3-based habitat tessellation
- Integrates with CLIMATE for climate-driven species range shifts
- Integrates with FOREST for canopy-biodiversity correlations
- Test:
uv run python -m pytest GEO-INFER-BIO/tests/ -v
